Hydractinia symbiolongicarpus: 130662565
Help
Entry
130662565 CDS
T09218
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130662565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130662565
03012 Translation factors [BR:
hsy03012
]
130662565
Enzymes [BR:
hsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130662565
Messenger RNA biogenesis [BR:
hsy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
130662565
Translation factors [BR:
hsy03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
130662565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
nSTAND3
AAA_22
AAA_14
AAA_19
NPHP3_N
ATPase
EP400_N
Motif
Other DBs
NCBI-GeneID:
130662565
NCBI-ProteinID:
XP_057317442
LinkDB
All DBs
Position
10:26331444..26361439
Genome browser
AA seq
1012 aa
AA seq
DB search
MHRGGESSRSRGGRKRGRRGGDHNGDDPSNHRGRHPSGLTGKDIGLWYARRGKSKREKLD
IQKRSVITLNKDHEAQISSLLHDMKTDVPIKDEAGSSSTLASSASPTSTSPTSTSPPLTS
PPLTSPPPTLPPSISTPSTSPPLTSLSSKVNLDIVKQEEMEIENIKEEEETFNDNKITLE
VNKVKFEYTENRNCALKSDPDFDEKIYSDFIEMKEETKCKKMLEFRKKLPAYKMKETLLQ
LVSINQVLVISGETGCGKTTQVAQFILDYFIIKKRASECHIICTQPRRISAISVAERVAS
ERGEAFGNTCGYQIRLESHLPRSRASILYCTTGILLRRLINDPYLANVSHIILDEIHERD
LMSDFLMVIVRDLLPHRPDVKVILMSATLNAEMFSTYFNNCPMLYIPGFTYEVTEYFLEQ
ILDLTRFYITPPLRKRPIYGKNRKVKLEEQQRFSNYIYSIQNKYTRYTIESLENMDHEYI
NHDLILHVIKYICRNFEDGAILIFMPGWDQISKLHDMLEKEPCFDSSNSILIPLHSLMPT
TNQREVFERPPPGVRKIIIATNIAETSITIDDVVFVIDTGKTKEKTYDVENNISCLQPVW
ISKASAKQRKGRAGRVQKGICFHLYTQYHYDNFQEYQLPEMLRTPLDQLCLQLKILRLGK
MWKFLLKSIEPPSKKAVDNAIECLTQMRALDEHEDLTPLGYHLAKIPVAPKVGRMILFGA
IFSCLDPVLTIAASLDFKDPFYIPIHKEKEADVKKNELSRGSKSDHIMLINAFKGWEESK
LMGTEGQYCWRYFLSINTLRMIDNMKKQFAQLLYDIGFATNSCPKNPAANIQSENVNLIK
AAICAGLYPNVAKVIPGKEGKKRPPKLGTVSYGRVEIHPKSVNSDVRQYESQWLIYHQKM
RTNKLYLFDSTMIAPFPLLFFGGKITVHQENGHDTIEVDEWIKFHSPLKTAQLVKKLRHE
LDILLNKKINNPAMELGVGHMTESRDERILAAIIDLITTEKVKVCVIFAQII
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgcataggggaggtgaatcaagtagaagtagaggaggacgtaaaagaggtagaagagga
ggtgatcacaatggtgatgatccaagtaatcacagaggtcgtcacccgtctggtctgact
ggcaaagacataggcttatggtatgcacgtaggggtaaatctaagagagaaaaacttgat
attcaaaaacggtcagtgataacattaaacaaagatcatgaagctcagatttcgtcgctg
ctgcatgacatgaaaacagatgttccaataaaagatgaagcagggtcatcatcaacattg
gcatcatcagcatcgccaacatcaacatcgccaacatcaacgtcgccaccattaacatcg
ccaccactaacatcgccaccaccaacattaccaccatcaatatcgacaccatcaacatcg
ccaccattaacatcgctgtcatcaaaggttaatttagatattgtaaaacaggaagaaatg
gagatagaaaatattaaagaagaagaagaaactttcaatgacaacaaaataacattggaa
gtgaacaaagtaaaatttgaatacacagaaaatcgaaattgtgctcttaagtctgatcca
gattttgatgaaaaaatatattcagatttcatagaaatgaaagaagaaacaaagtgcaag
aagatgctggaatttcgtaagaagcttcctgcttataaaatgaaggagaccctactccaa
ctggtgtcaattaatcaagttttagttattagtggagaaactggatgtggaaaaacaacc
caggtcgcacagtttattttagattattttataatcaaaaaaagagcttcagaatgtcat
ataatatgtacacaaccgagaagaatcagtgctatttctgttgcagaacgagttgcatca
gaacgtggagaagcttttggaaatacatgtggatatcagatcagattggaaagccacctt
ccaaggtcaagagcttcaatattatactgtactactggaattctgctgaggcgacttata
aatgacccgtaccttgcaaatgtgagtcacataattttggatgaaatacatgaacgagat
ctgatgtcagactttttaatggttattgtgagagatttattaccacataggcctgatgta
aaagttattttgatgagtgcaacattaaatgcagagatgttttcaacttattttaataat
tgcccaatgctttatattcctggctttacatacgaggtcacagaatactttcttgaacaa
atactagatctaacaagattttatatcactcctccgcttcgaaaaagaccaatatatggc
aagaacagaaaggtgaaattagaagagcaacaaagattttctaattatatctacagcatt
cagaacaaatatacaaggtatacaatagaatctttagaaaacatggatcatgagtacatt
aatcatgatctgattttgcatgttatcaaatacatttgtcgcaattttgaggatggcgca
atacttatcttcatgccaggatgggaccagataagcaagcttcacgacatgcttgaaaag
gagccttgttttgactcaagtaattctattttgatacctctgcactccttgatgccaacc
acaaaccaaagagaggtatttgaaaggccaccacctggagtgcgcaaaattattatagcg
accaacattgcggaaacgagcattacaattgatgatgtggtttttgttattgatactggt
aaaactaaagaaaagacttacgatgttgaaaataacatatcttgccttcaacctgtttgg
ataagcaaggcatctgctaagcaaagaaaaggaagagctggaagagttcaaaaaggaatt
tgttttcacctgtatactcagtatcattatgataattttcaagaatatcaacttccagag
atgttaagaacacctcttgatcaactctgcttgcagctgaagatactaagacttggaaaa
atgtggaaatttcttttaaaatccattgaacctccatcaaaaaaagctgtagataacgct
atcgaatgtttgactcaaatgagagcgctggacgaacatgaagatctaacaccgttaggt
taccatttagcaaagatcccagttgctccgaaagtaggacgaatgattttgtttggtgcc
atcttctcttgtcttgatccagtattgactattgctgctagcctcgacttcaaagatcct
ttttatatacccattcacaaagaaaaagaagctgacgtgaagaaaaacgagttgtcacgt
ggttcaaaaagtgatcatatcatgcttattaatgcatttaagggatgggaagaatcaaag
ttgatgggtactgagggacaatattgctggagatattttttatcgataaatacgttaagg
atgattgacaacatgaagaaacaatttgcacaattgttgtacgacattgggtttgcaacg
aattcgtgcccgaaaaatccagctgctaacatacaatctgaaaacgtcaacctcatcaag
gcagcgatatgtgctggtttgtatcctaatgttgcgaaggtgatcccagggaaagaaggg
aaaaagaggccaccgaagttaggtactgtgtcgtatggtcgtgttgaaatccatccaaag
tcagtgaacagtgacgttcgacagtatgaatcacaatggttgatttatcatcaaaaaatg
agaacgaacaagctttatttgtttgactcgacgatgattgcaccatttccgcttctattt
tttggtggcaagattactgttcatcaagaaaatggtcacgacacaatagaagtggatgag
tggattaagtttcattcacccttgaagactgctcagttggttaagaaattacgtcatgaa
ctagatattctgctaaacaagaaaatcaacaatccagctatggagctgggagttggtcac
atgactgaatcacgtgatgaaaggatattggcagcaataatagatctgataaccactgag
aaagtcaaggtttgtgtgatatttgcacagattatatga
DBGET
integrated database retrieval system
