Hibiscus syriacus (Rose-of-Sharon): 120113512 Help Entry 120113512         CDS       T09559                                  Name (RefSeq) DNA ligase 1-like   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism hsyr  Hibiscus syriacus (Rose-of-Sharon) Pathway hsyr03030   DNA replication hsyr03410   Base excision repair hsyr03420   Nucleotide excision repair hsyr03430   Mismatch repair Brite KEGG Orthology (KO) [BR:hsyr00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     120113512    03410 Base excision repair     120113512    03420 Nucleotide excision repair     120113512    03430 Mismatch repair     120113512  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:hsyr03032]     120113512    03400 DNA repair and recombination proteins [BR:hsyr03400]     120113512 Enzymes [BR:hsyr01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      120113512     6.5.1.6  DNA ligase (ATP or NAD+)      120113512     6.5.1.7  DNA ligase (ATP, ADP or GTP)      120113512 DNA replication proteins [BR:hsyr03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     120113512  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      120113512 DNA repair and recombination proteins [BR:hsyr03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      120113512    NER (nucleotide excision repair)     Other NER factors      120113512    MMR (mismatch excision repair)     Other MMR factors      120113512 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Motif Other DBs NCBI-GeneID:  120113512 NCBI-ProteinID:  XP_038990585 LinkDB All DBs Position Unknown AA seq 778 aa AA seqDB search MLKPRPSHLLCYTCLSRSLNLVIPPSSSSFSPSSKCHFFRSKPLSLSSLNPYSNMSSRPS AFDALMSNARRLAGEKSPHSSSPTKKRKSKTIDSTEVKPDPEVPSGGIQKPNLDETKKPP DLKKMKPGSASERNVELKGKIALLKKKPADFDPKMVVCWEKGERVPFLFLSLAFDLISNE TGRIVITDIVCNMLRTVIDTTPDDLVATVYLAANKVAPAHEGIELGIGDASIIKALAEAC GRTESQIKSQYKERGDLGLVAQASRSSQSMMRRPDSLTVVKVFDTFRLIAKESGKDSQEK KKNRIKALLVAATDCEPLFLIRLLQIKLRIGFSDQTLLAALGQAAVYNEQHSKPPPNIQS PFEEAAKIVKQVFSILPVYDKIVPALLTGGIWDLRTTCSFTPGVPIGPMLAKPTKGVAEI VNKFQDTDFVCEYKYDGERAQIHYMENGSVEIYSRNAERNTGKFPDVVSAISRFKKSSVK SFALDCELVAYDQVQKKILPFQILSTRARKNVVESEIKVDVCIFAFDILYLNGQSLLHEQ LKVRRERLYDSFDEEAGFFQFATALTSNDLEEIQAFLNSAVSSSCEGLIIKTLDRDATYE PSKRSLNWLKLKKDYMESIGDTLDLVPIAAFHGRGKRTGVYGAFLLACYNDSNEEFQSIC KIGTGFSEAQLEECSASLRSKVIPEPKSYYRCEIKPDVWFEASEVWEVKVADLTISPVHC AAIGIVNPAKGISLRFPRLVRVREDKTPEQATSSEQVAEMYNAQKHNQTNNEDDGEDD NT seq 2337 nt NT seq  +upstreamnt  +downstreamnt atgctaaagcctcgcccatcccatctcctttgctatacttgtctttctcgctctctcaac cttgtcattcctccatcttcttcttcattttctccctcttctaagtgccatttctttcgc tccaaacccctctctctttcctctttaaacccttactccaatatgtcttctcgcccctcc gccttcgatgctctcatgtccaatgctcgccgtttagctggcgaaaagagtcctcactcc tcttcgcccaccaagaaacgcaaatccaaaaccatcgactcaactgaagtcaaacccgac ccagaagtccccagtggtggaattcaaaaacccaatttagatgagacgaagaaacccccg gatttgaagaagatgaaaccggggagtgcctcggagagaaatgtggagttgaaagggaaa attgcgctattgaagaagaagccggcggattttgatccaaaaatggtggtgtgttgggag aaaggagagagggttccgtttttgtttctgagcctggcgtttgatttgatatcgaatgag acgggtcggattgtgataactgatattgtttgtaatatgttgaggactgttattgatacc acaccggatgatttggtggcgacggtttacctggcagcaaataaggttgctccggcgcat gaggggatagagctgggaattggagatgcctccattatcaaggccctggctgaggcctgt ggaaggactgaatcacagatcaagagtcagtacaaggaaagaggagacctgggccttgtt gcacaagctagtcgttcatcccaatcgatgatgcgcaggcctgattcattaactgttgtc aaagtgtttgacacctttcggctaattgctaaggaatctggaaaggacagtcaggaaaag aaaaagaatcgtatcaaggcacttcttgttgctgcaactgactgtgaacctctgttcttg attcgtctacttcagataaagttgcggattgggttttcagatcagactctgttagctgcg ctaggacaggctgcagtatataatgaacaacattctaaaccacctccaaacattcagtct ccatttgaggaggctgccaaaattgtcaaacaagttttttctatcctcccagtatatgat aaaatagtccctgcacttttgactggcggtatatgggatcttcgaacgacttgtagcttt acaccgggtgtcccaattggacctatgctagcaaaacctaccaaaggtgttgctgaaatt gtaaataaattccaggatactgactttgtatgtgaatataaatatgatggagaacgtgca cagattcactacatggagaatggttcagttgagatatatagtcgaaatgctgagaggaac acaggaaagtttcctgatgttgtttctgcaatttctagattcaagaagtcctccgtaaaa tcatttgctttggattgtgagcttgttgcttatgatcaagttcaaaagaaaattttaccc tttcagatccttagtacacgagcacgaaaaaatgtggtagagagtgaaatcaaagttgac gtgtgcatatttgcttttgacatcttatatcttaatgggcaatcacttcttcatgaacag cttaaagttcggagagagaggctttatgattcatttgatgaagaagctggattttttcag tttgcaacagccttaacatcaaatgatcttgaggagattcaagctttccttaattctgct gtttcttcaagttgtgagggtttaattatcaaaacattggatagagatgctacgtacgag ccatcaaagcggtcactcaactggctaaaattgaagaaagattacatggaaagtatcgga gacacattagatctcgtacctattgctgctttccatggccgtgggaaacggactggcgtc tatggtgcctttctcttggcatgttacaatgacagtaatgaagagttccagagtatctgt aaaattggtacaggattttctgaagcacaacttgaagaatgttctgccagtctccgctct aaagtgattcctgaaccaaagtcatactatcgttgcgagataaagccagatgtttggttt gaggcttcagaggtttgggaggtaaaagttgcagacttgaccattagccctgttcattgt gctgctattgggattgtgaatcctgctaagggtatatctctccggtttccccgtttagtt cgtgttcgagaagataagacaccagagcaagctacatcatcagagcaggtggctgagatg tataatgctcaaaaacacaatcaaactaataatgaagacgatggtgaggatgattga

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