Hibiscus syriacus (Rose-of-Sharon): 120114372
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Entry
120114372 CDS
T09559
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120114372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsyr03041
]
120114372
Spliceosome [BR:
hsyr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
120114372
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_EML_2
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
PRP4
WDR90_beta-prop_4th
Beta-prop_Aladin
ANAPC4_WD40
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_WDR41
WD_LRWD1
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_SPT8
WD40_like
Cytochrom_D1
Tricorn_2nd
Motif
Other DBs
NCBI-GeneID:
120114372
NCBI-ProteinID:
XP_038991241
LinkDB
All DBs
Position
Unknown
AA seq
563 aa
AA seq
DB search
MDVDDDNSPASIAVPDGKTTVSTDDNTPIQPMAPPVVTPAAVPSIAPIPAVPPPLAVNPL
ASLPGRPPVLKPPVSQNGEVKTGDSDSDHEDDGRATGGEYEISEESRLVRERQEKAMQDL
LMKRRAAALAVPTNDMAVRTRLRRLGEPITLFGEREMERRERLRMIMAKLDAEGQLDKLM
KAHEEEEAAISAKAEDIEEDIEYPFYTYGPKELLDARIDIAKYSIVKAAARLQRAQRKRD
DPDEDIDAEIDWALRQAGNLALDCSEIGDDRPLSGCSFSCDGKLLATCSLSGVAKLWSMP
RLSKVSALKGHTERATDVTFSPVHDHLATASADRTAKLWSPDGSLLKTFEGHLDRLARIA
FHPSGKYLGTTSFDKTWRLWDIDSGVELLLQEGHSRSVYGIAFHQDGSLVASCGLDALTR
VWDLRTGKSILALEGHVKPVLGASFSPNGYHLATGGEDNTCRIWDLRKKKSLYTIPAHSN
LISQVKFEPQEGYYLVTSSYDMTAKVWSGRDFKPVKSLPGHEAKVTASDISEDGRYFVTV
SHDRTIKLWTAGNIEKENDMDLD
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atggatgttgatgatgacaacagtccagcttcaatcgctgttcctgatggcaaaaccacg
gtgtctacagatgataatacgccaattcagcctatggctccgcctgtggtcacacctgca
gctgtgccatctattgctccaatacctgcagttcctcctcccctggctgtcaacccattg
gcatctctcccaggtcgccctcccgtccttaagccacctgtgtctcaaaatggtgaggtg
aaaactggtgattcagactctgaccatgaggatgatgggcgagctactggtggggaatat
gagatctcagaagagagcagactggttagagagcggcaagaaaaggcaatgcaagatctt
ctgatgaaacgacgtgctgctgcgctagcagtgcccactaatgacatggctgtccgtact
cgacttcgccggcttggtgaacctataactctttttggagaaagagagatggaaaggagg
gaaaggctgcgaatgattatggcgaagctggatgctgaggggcaattggacaagttaatg
aaagctcatgaggaggaagaggctgcaatttctgctaaggcagaggacattgaagaagac
atcgaatatcccttttatacttatggtccaaaagagcttttggatgctaggattgatatt
gcaaagtactctattgtaaaggcagctgcacgtcttcaacgtgcccagagaaaaagggat
gatccagatgaagatatcgatgctgaaattgattgggctctaaggcaggcggggaatttg
gctcttgattgcagtgaaattggagacgatagaccactttcgggttgttctttctcttgt
gatggaaaacttctagccacctgctctttgagtggagttgctaagttgtggtcaatgcct
aggctaagcaaggtttctgcattaaagggtcacacagaacgtgcaacggatgttacattt
tctcctgtgcatgatcatttagcaactgcttctgctgaccgaacagcaaagttatggagc
cctgatggatctctcttgaagacatttgagggtcatttggatcgccttgcacgtattgcc
ttccatccttcagggaagtaccttggtacgacaagctttgataaaacatggagactgtgg
gacatagatagtggtgtggagttgcttctccaagaaggtcacagtaggagtgtctatgga
attgccttccatcaagatggatctttagtagcatcctgtggacttgatgcacttactcgt
gtttgggatcttcgcactgggaaaagtattcttgctttggaaggccacgtgaagccagtt
cttggtgctagtttttcacctaatggctatcatttagccacaggcggtgaagataatact
tgccgcatatgggatttgaggaagaaaaagtctctgtacaccatacccgcccattcaaat
cttatatcacaagtgaagtttgagcctcaagagggatattacctggtcacatcttcttat
gacatgactgcaaaggtttggtctggaagagattttaagcccgttaaaagcttacctggc
catgaagcaaaagtcaccgcttcagatattagcgaagatgggcgatattttgtgacagtc
tctcatgatcgaactataaagctatggactgcaggtaacattgaaaaggaaaatgatatg
gatttggactga
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