Hibiscus syriacus (Rose-of-Sharon): 120114696
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Entry
120114696 CDS
T09559
Name
(RefSeq) 5'-3' exoribonuclease 3-like isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03008
Ribosome biogenesis in eukaryotes
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120114696
09123 Folding, sorting and degradation
03018 RNA degradation
120114696
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsyr03021
]
120114696
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120114696
03009 Ribosome biogenesis [BR:
hsyr03009
]
120114696
03016 Transfer RNA biogenesis [BR:
hsyr03016
]
120114696
Transcription machinery [BR:
hsyr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120114696
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
120114696
Ribosome biogenesis [BR:
hsyr03009
]
Eukaryotic type
Pre-60S particles
RNases
120114696
Transfer RNA biogenesis [BR:
hsyr03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
120114696
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
120114696
NCBI-ProteinID:
XP_038991448
LinkDB
All DBs
Position
Unknown
AA seq
1091 aa
AA seq
DB search
MGVPTFYKWLAEKYPRILVEVLEEVPVVADGISIPVDTSKPNPNRIEYDNLYLDMNGIIH
PCFHPEDKSSPRTFEEVFQRIFDYIDRLFVMVRPRKLLFMAIDGVAPRAKMNQQRSRRFR
AAKDAAEAAAEEARLREEFEREGKRLPPKEETLLSDSNIITPGTSFMAVLSIALQYYIHL
RLNYDPGWKNIKVILSDANVPGEGEHKIISYIRLQRNLPGFDPNTRHCLYGLDADLIMLA
LATHEVHFSILREVIFNPREEKCILCRQMGHRAADCEGKVKRKAGEFDEEGDIKAFDRKP
YQFLNIWTLRNYLEHEFRISNPPFEIDFEHVVDDFIFMCFFVGNDFLPHMPTLEIREGAI
NLLMTIYKKEFRRMGGYLTDGSKPNLSRVEHFIQAVGSYEEQIFRKRAQSHQRQAHRIKN
RKAEVRRGDDVEPKVEPDSFVPVARFNGSRLSSGSSPAPFQQTMESNGQPSKVQRLKSGA
AVSASTIKTKDNIESNICFPSSGEIHENKEEFEAKLKEFIREKTDVFISNNHEEDKIKLG
ESGWKERYYQEKFLAKTPEEMETVRKDVVLKFTEGLCWVMHYYYEGICSWRWFYPYHYAP
FASDLKDLAQLGIQFELGSPFKPFNQLLGVFPAASSHALPEQYRKLMADPNSPIIDFYPT
DFEIDMDGKRFSWQGIAKLPFIDEERLLAEVAKIEHTLTEEEVRRNSTMCDMLFVAASHR
LSEQILYLDSRCKQLTVGQQAPVDKVKPDLRDSCSDGMNGYIFPCAGDSHPPIFRSPIKD
MEDILANEVMCCMYRTPKAHKHIPRPPAGVALPPKMVQLSDLDSKPVLWHEDSSRRPWEN
GRSAVRFTVERHNPPESISGRKLGELSHRLIAKSLLKVDRNGFSDDKQALPLSISTAPYI
PHVNNRSQDQEGKRREDKKSRPASKPVSRGSYPLTRSRTRIAPPEQDSRSRTRTAPAKQD
KSHAGYPSSQNHPLDFPNAQIYHPYPIYIPANYLHYPSGHHQNGGMRLVTMPMAQMSTVA
GPYPSLPSGNYGKNTRYQAHLHSNYPQWGGVIMAPQGNLNGSAAIPLHHPHHLHLVNQGG
NPFSVLGMNRK
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccaacgttctacaaatggttagcagagaagtatccgcgtattctggttgaa
gtcctcgaggaagtaccggtggtggccgacggcatctccattccggtggatacgagtaaa
cctaaccctaacagaatcgaatatgataatctttatctcgatatgaatgggatcattcat
ccttgtttccaccccgaggacaaatcctctccaagaacttttgaagaagtatttcagcgc
atttttgattacatagatagattgtttgttatggtccgtcctcgaaagcttttgtttatg
gctattgatggtgttgcccctcgggctaagatgaatcaacagcgatctaggcgctttaga
gcagccaaagatgctgcagaagcggcagctgaagaagcacgacttcgagaggagtttgag
agggagggcaaaagacttcctcccaaagaggaaacgctgctttctgattcaaatattatc
acgcctggaacttcatttatggctgttctgtcaattgctttgcagtactatatccacctt
agattaaattatgaccctggttggaaaaatataaaggttattctgtctgatgccaatgtt
ccgggtgaaggagaacataaaatcatctcatatatacggctccaaaggaaccttcctggt
tttgatccaaatacacgccattgcttgtatggtttggatgctgatttaattatgttggcc
ttggccactcacgaagttcacttttcaatccttcgagaggttatcttcaaccctagagaa
gaaaaatgtatcttgtgtcgtcagatggggcatagagcggcagattgtgaaggaaaggta
aagcggaaggctggagaatttgatgaggaaggtgatataaaggcttttgacagaaagcca
taccagtttctaaacatatggacactcaggaattatctggaacatgaattcagaatcagt
aatcctccttttgaaattgacttcgaacacgttgtggatgattttatattcatgtgcttc
tttgtgggcaatgatttcttacctcatatgcctacgctagagattcgtgagggtgcaatc
aacttgttaatgaccatatacaagaaggaatttagaagaatgggtggttatttgaccgat
ggaagcaagccaaatttgagtcgggtagagcattttatacaagctgtgggatcctatgaa
gaacaaatattcaggaaaagagcacaatcacatcagcgtcaagcacatagaatcaagaat
agaaaagcagaagttagaagaggagatgatgttgagcctaaagttgaacctgattctttt
gttccagttgctagatttaatggttcccgtctttcctctggttcttcacctgcaccattt
cagcaaacaatggagtcaaatggtcaaccgagcaaagtgcaacgcttaaaatcaggggcc
gctgtcagtgcttctactatcaaaacaaaggataatattgaatcaaacatatgttttcct
tcttcaggagagatacatgagaacaaagaagaatttgaagcaaaactgaaggagtttatc
cgtgagaaaaccgatgtttttatctccaacaatcatgaggaagacaagattaaactggga
gagtcagggtggaaagaaaggtattatcaagaaaagtttttggcaaaaactccagaagaa
atggaaacagtacgaaaagatgttgttttgaagttcacggaaggtctatgttgggtcatg
cactattactatgaagggatttgttcttggaggtggttttatccttatcattatgcaccc
tttgcatctgatttaaaggaccttgcccaactgggtattcagtttgagctgggctcccct
ttcaaaccatttaatcagttattgggggtttttcctgctgcaagttcccatgcacttcct
gaacaatataggaaattgatggctgatccaaattcacccattattgatttttatccaact
gattttgaaattgacatggatggaaagcggttttcatggcagggtattgcaaaattgcct
ttcatcgacgaagagcgacttcttgcagaggttgcgaaaatagaacacactttgacggag
gaagaagttcgaagaaacagtacaatgtgcgacatgctttttgtggcggcctcacatcgt
ctctcagaacaaatcttatatctcgacagtcggtgtaaacaattgacagtagggcaacaa
gctccggtcgacaaagtcaaacccgatttgagggattcctgcagtgatgggatgaatggt
tacatattcccttgtgctggggactctcacccacctatattcaggtctccaatcaaggac
atggaagatatattggccaatgaagtcatgtgttgtatgtatagaactccaaaagctcat
aaacatatcccccgacctcctgctggagttgcattacctcctaagatggtgcaactgagt
gatttagattccaaacctgtattatggcatgaagattctagtaggagaccttgggaaaat
ggaagatctgcagttcggtttacggtggaaaggcataaccctccggaatctatttctggc
cgtaagcttggggagttatcacacagacttattgctaaaagcttgttgaaagtggatcgt
aatggatttagtgatgataagcaggctctgccactatcaattagtactgctccctacata
ccacatgtaaataataggtctcaggaccaggagggtaagaggagagaagataagaagagt
aggccagcttctaaaccagtttctcgtggaagttaccctttaactcggagtcggactagg
atagctcctcctgaacaagattctcgtagtcggacaagaacagctcctgctaaacaagac
aaatctcatgcaggttacccttcatcacagaatcatccgttggattttcccaatgcccag
atttatcatccttatccaatatatattcctgcaaattatttgcactacccttctggacat
caccagaatggtggaatgaggctcgtaaccatgcctatggcacaaatgtcaactgtggct
ggtccatatccttctcttccaagtggtaactatggtaaaaatacaaggtaccaggcacat
ttacatagcaattatccacagtggggtggtgttataatggccccgcagggaaaccttaat
ggctcggcagctatccctcttcatcaccctcatcatcttcatcttgttaatcaggggggg
aacccgttttctgtgttaggcatgaataggaagtag
DBGET
integrated database retrieval system
