Hibiscus syriacus (Rose-of-Sharon): 120114822
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Entry
120114822 CDS
T09559
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120114822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120114822
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120114822
mRNA degradation factors
5'-3' decay
Lsm complex
120114822
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
120114822
NCBI-ProteinID:
XP_038991534
LinkDB
All DBs
Position
Unknown
AA seq
128 aa
AA seq
DB search
MSWAGPDDIFLSTSLATYLDKKLLVLLRDGRKLLGLLRSFDQFANVVLEGACERVIVGNL
YCDVPLGLYVIRGENVVLIGELDLEKEELPPHMTAVSEAEIKRAQKAEREATDLKGSMRK
RMEFLDFD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggctggccctgatgatatctttctctccacttctcttgcaacttatctcgac
aagaaactccttgtcttgctgagagatggccggaagcttttgggattactacgttctttt
gatcaattcgctaatgttgttctagaaggagcttgcgaacgggttattgttggcaatttg
tactgtgatgtcccgttaggtctctatgtaatccgtggggagaatgttgtcttaatagga
gagctggacttggaaaaggaggagcttccgccacatatgactgctgtgtcggaagctgag
ataaaaagggctcagaaagctgaaagggaagcaacagatctgaagggctccatgagaaaa
agaatggagtttcttgatttcgattaa
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