Hibiscus syriacus (Rose-of-Sharon): 120115128
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Entry
120115128 CDS
T09559
Name
(RefSeq) LOW QUALITY PROTEIN: enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120115128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120115128
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120115128
mRNA degradation factors
5'-3' decay
Decapping complex
120115128
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_EML_2
Beta-prop_TEP1_C
DUF520
Motif
Other DBs
NCBI-GeneID:
120115128
NCBI-ProteinID:
XP_038991824
LinkDB
All DBs
Position
Unknown
AA seq
1393 aa
AA seq
DB search
MASSCNLNPQPQSDSGGGIGGFDLSTPFNLSSSPMLQHQHLQNMNAMAPSNTTNLTTSPS
FPAQSSMLPPCPYMVPSSSYPPPTRPYTFQPHQYLPYPLPQHQQPLHPHPSPNPQLNTNR
TIPYQPQPSVPTTPTSGNDILWAFLGTQTQSQTPAPLPSAPLLNMNPSTSSPSPSLSPFR
LLSSKAPKGRHLFGTNPLYDINVWLPSEELPQLEVTPITKYVSDPSLVLGHQIAVNRNYI
CYGLNLGNIRILNINTALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRXFVWKINEGP
DDENKPQIFGKVIIAIQFLGQEELKHPRVCWHPYKQEILMVAIGNRILKIDTTEVGKLEG
FSAKEPLNCSVDKLIDGVQFVGKHDGEITELSMCQWLTTLLSSASVDGTVKIWEDSKPLP
LAALRPHDGCPVYSATFLTAPHCPDNIVVITGGPLNREVKIWASSGEEGWLLPSHGESWQ
CTQTLELRCSAESEVDNAFFNQVVALPRAGLLLLANAKKNALYAVHIDYGPNPAATCMDY
IAEFTVTMPILSFTGTSDSLPGGESTVQVYCVQTQAIQQYALDLSQCLPPLLENTNLDRT
DSSVAHVYDGMNSDASLELSHGYKPTEKTLSSSISVSCINTSSFESAPMMGHPQKSASSE
VAFISESAVSGMESKPSTLLSDSSAENTHTSSTPLPLTPKSSGFRNPSGSDHVNDSALDH
SVGHKVDTVQENMVEMPYSGDHLQKGEDVAQNDISTVPDPHAVFKHPTHLVTPSEILSNV
SSSTESAQVSQVINEGEATVEDVVKNDAEIKEVDDEVLGETRFSQTNETKCQKGSHTTVT
DNKEKAFYSQASDLGIQLAREFCVESYGVEGAQQANSIGVSVQDGLGNAGDGDDHNVIKD
SSLKVGETDTAVTVFPSSSSAKGKKQKKKTSQVSIQSSPSASPYNSINSSNETGCCSRAL
SIDATFPQLLAMEDMLQQSLSVQKEMQKQMNAIVSAQVNKEGKRLEASLGRSIEKAIKAN
TDALWARFQDENARQEKLERDRMQQITNLVTNCINKDLPAMFEKSLKKEIAAVGPVVARA
IIPTLEKSISSAITESFQKGVGEKTVNRLERSVSSKLEVTLARQIQAQFQISGKLALQDA
LRSSLETYVIPAFEMSCKSMFEQIDVKFQKGIREHTAAARQQFEKSHSPVVAALQDAISS
AASITQTLSGELANGQQKLIAMAAAGANSNAGNHSVTQSSNGPLAHLHEMPEAHMDPMKE
LGRKIAEKKYDEAFTAALHRSDVSIVSWLCSQVDLQGILSMKPCPLSQGVLLALFQQLAC
DINKETSRKLAWMTDVAVAIVPSDPTIAMHVERIFKQVSQIVDHVQTMSSASASESASIR
LLRFVINSVLSCK
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctcttgtaatctcaatcctcaaccacaaagtgatagtggaggtggaatcgga
gggtttgatttgagcacaccgtttaatctcagttccagtcctatgctgcaacatcagcat
cttcaaaacatgaacgcaatggcaccttctaacactaccaacctgactacatctccatct
ttcccagcccaatcctccatgctgcctccatgtccctatatggtgccttcctcatcttac
cctccgcctactaggccctacactttccaaccccatcaataccttccctacccgcttcct
caacaccaacagcctttacatcctcatcctagtcctaatcctcagcttaataccaataga
accattccttatcaaccccaaccctcagtacccaccacccctacttcaggaaatgacatt
ttgtgggcctttttgggcactcaaactcagtcacaaactcctgctcctctcccgtctgcc
ccacttcttaatatgaacccatccacttcttcgccctctccctctctctcacctttccga
ctgctgagcagtaaagcccccaagggcaggcatctctttggaactaatcctctctatgat
attaatgtctggctgccaagtgaagaattgccccaacttgaggtcactcccattaccaag
tatgtttctgatcccagccttgttctgggtcatcagattgctgttaataggaattacata
tgctatggtctcaatcttgggaatatccgtatactcaacatcaacactgccctccgatcc
ttgcttcgtggccacactcagagagtaacagatatggctttttttgccgaggatgtccac
cttttggccagtgcaagtgttgatggacggngttttgtatggaagatcaatgaaggtcct
gatgatgaaaataagccccaaatttttggcaaagttattattgccatacaatttttgggg
caagaagaattgaaacatccacgagtctgttggcatccttacaaacaagagattttgatg
gttgctattggaaatcgtatcctgaaaattgatacaacggaagttggaaaacttgaaggg
ttttcggcaaaggaacctcttaattgctctgttgacaagcttattgacggggttcagttt
gttggtaaacatgatggtgagatcacagagttgtcaatgtgccaatggttgactaccctt
ttatcttcagcttcagtagatggcacggtgaaaatttgggaagatagtaagcccttacca
cttgcagcgttgagaccacatgatggatgtcctgtttactcagcaacattcttgactgcc
ccacattgccctgacaatatagttgttataactggaggcccactaaaccgtgaagtgaag
atatgggcctcttcaggtgaagaaggttggttgttgcccagtcatggtgaatcatggcag
tgtacccaaacattggaattgaggtgttctgcggagtctgaggttgacaatgcattcttt
aatcaagttgtggcacttccccgtgcaggcctgcttctgctcgcaaatgccaagaagaat
gctctatatgctgtacacatagattatgggcctaatccagcagcaacctgcatggattat
atagctgaattcactgtcacaatgcctatattgagtttcactggaacaagtgatagttta
ccaggtggagaatctactgtccaagtgtactgtgttcaaacacaggctattcagcaatat
gctttggacttgtctcaatgcctgccaccactcctggaaaacacaaacctggatagaaca
gattccagtgttgctcatgtttatgatggcatgaactctgatgcttctttggaattatct
catggatataaaccaactgagaagactctaagctcctcaatttcggtgtcatgtataaac
accagcagctttgaaagtgctcccatgatgggccatcctcaaaaatcagcttcttctgag
gttgctttcatatccgagagtgctgtgtctggtatggaaagtaagccaagtactttactg
tctgatagtagtgccgaaaatacacacacttcatcaactccacttccattaactccaaaa
tcttctggttttagaaatccatcaggttctgatcatgttaacgactcagcacttgatcat
tctgttggccacaaagtagatacggtccaggagaatatggttgaaatgccctactcaggt
gatcacttgcagaaaggtgaagatgttgctcagaatgacatttcaactgttcctgatcct
catgcagtgttcaaacatccaacccatctggtaacaccatctgagatattgtctaatgta
tcttcatcgacagagagtgctcaggttagtcaggttattaatgagggggaggcaacagtc
gaagatgtggtaaagaatgatgctgaaataaaagaggtagatgatgaagttcttggtgag
acaagattttctcaaactaatgaaaccaaatgtcaaaaaggctctcatactactgttaca
gataacaaagaaaaggcattctactctcaggcatcggatcttggcattcagttggccaga
gaattttgtgtagaaagttatggtgttgagggagctcaacaagctaattctattggtgtt
tcagttcaagatggacttggtaatgctggagatggggatgaccacaatgtgattaaagat
tcctctctaaaggtcggtgaaacagacactgccgtcactgttttcccatcttcttcttct
gctaaagggaaaaagcagaagaagaaaacctctcaagtatctatccaatcttccccttca
gcgagcccgtataattctataaattcatctaatgaaacagggtgctgttccagggctctg
tcaattgatgctactttcccccaattgctagccatggaggatatgcttcagcagtccctt
agcgtgcagaaggaaatgcagaagcagatgaatgcaattgtctctgcccaggttaacaaa
gaagggaaaagactggaagcatccttgggcaggagcattgagaaagctataaaggcaaat
acggatgctttgtgggctcgtttccaagatgaaaatgcaagacaagagaagttagaaaga
gatcgcatgcagcaaataacaaatttggtcaccaactgtattaataaggacttgccagcc
atgtttgagaaatccttaaagaaggaaatagctgcagttgggcctgttgtggctcgggct
attattccgactctggagaaaagtatatcttctgctattacggagtcgttccagaaagga
gttggagagaagacagtgaatcgtttggagaggtccgtcagttcaaaacttgaagtgaca
ttggcccgacaaatccaagcacaatttcaaatttctgggaagctagcacttcaggatgca
ctgaggtctagcttggaaacttatgttattccagcatttgagatgtcttgtaaatccatg
tttgagcaaattgatgtaaaatttcagaaagggataagagaacacacagctgctgcacgg
cagcaatttgaaaaatcacattctcccgttgtcgctgctctacaggatgctattagttct
gcagcttcaatcacacaaactttaagtggagaattggcaaatgggcaacaaaaacttata
gctatggcagctgcaggtgccaactctaatgcaggaaatcactcggtgacacaatcgagt
aatggaccattggctcatctgcacgagatgccggaggcacatatggatccaatgaaagag
ttgggaagaaagatagctgagaagaaatatgatgaagcattcaccgcagccctgcacaga
agtgatgtctccatagtttcctggttgtgttctcaggtcgatctgcaagggatattgtcg
atgaaaccatgcccgctgagccaaggagtattgctagctcttttccagcaactggcttgt
gatattaataaggaaacaagtagaaagctggcatggatgactgatgtagccgtggccata
gtaccctcagatccaactattgccatgcatgtcgaacggatcttcaaacaggtctcgcag
attgtcgatcatgtacaaaccatgtcatctgcatccgcatcggaatccgccagcatccgc
cttcttaggtttgtcataaacagtgtgttgagctgtaaatga
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