Hibiscus syriacus (Rose-of-Sharon): 120117556
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Entry
120117556 CDS
T09559
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120117556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120117556
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120117556
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120117556
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
120117556
NCBI-ProteinID:
XP_038993749
LinkDB
All DBs
Position
Unknown
AA seq
273 aa
AA seq
DB search
MSDLPKVDSVHIREVWNDNLEEEFALIREIVDKYNYVAMDTEFPGVVLRPVGTFKNINDF
NYQTLKDNVDMLKLIQLGLTFSDEHGNLPTCGTENPCIWQFNFREFNLSEDIFASDSIEL
LRQCGIDFMKNNERGIDVMRFGELLMSSGVVLNDNVSWVTFHSGYDFGYLLKLLTCKSLP
DSQAGFFDLINIYFPVVYDIKHMMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTS
CTFRKLRDNFFNGSTEKYAGVLYGLGVQNGQTN
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatttgcccaaagttgattcagttcatattcgggaagtttggaacgataatcta
gaagaagagtttgctttgatccgtgaaattgttgataaatacaattatgtggctatggat
accgagttcccgggtgtggttttgcgccccgtgggaactttcaagaatataaatgatttt
aactaccaaactttgaaagataatgtggatatgttgaaactgatccagctgggtctcact
ttttctgatgagcacgggaatcttcccacttgtggaactgaaaacccttgcatttggcaa
ttcaatttccgtgagtttaatttaagcgaagacatcttcgccagcgattcgatcgagttg
ttgcgccagtgtgggattgatttcatgaagaataatgagaggggtatcgatgtgatgcgg
ttcggtgagcttttgatgtcgtccggggttgtgctgaatgataacgtgagctgggtcacc
tttcatagtggatatgacttcgggtatttgcttaagcttttgacttgcaagagtttgcct
gatagtcaagccgggttctttgatctgatcaatatatatttccctgtggtatatgatatc
aagcatatgatgaagttttgcaacagccttcacggtggcttgaacaagcttgccgagttg
ttggaagtggaaagagttggtgtgtgtcatcaagccggctcggatagcttgctgacatct
tgtacgtttaggaagttgagagataactttttcaacggctccacggagaaatatgcaggt
gtgttgtatggcctaggtgtccagaatggacagactaattag
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