Hibiscus syriacus (Rose-of-Sharon): 120117682
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Entry
120117682 CDS
T09559
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03013
Nucleocytoplasmic transport
hsyr03015
mRNA surveillance pathway
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120117682
09122 Translation
03013 Nucleocytoplasmic transport
120117682
03015 mRNA surveillance pathway
120117682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120117682
03041 Spliceosome [BR:
hsyr03041
]
120117682
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120117682
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120117682
Spliceosome [BR:
hsyr03041
]
Complex C
Other components
EJC/TREX
120117682
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120117682
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
120117682
NCBI-ProteinID:
XP_038993855
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MGETRDNDAYEEELLDYEEEEEKAPDSVAAKANGEVTKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIEPTPGQVVALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILA
LTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVN
RASELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacaagggacaacgatgcctacgaggaagagcttcttgactacgaggaagaa
gaagagaaagcccctgactctgtcgctgctaaagccaatggagaggtcaccaagaagggc
tatgttgggattcacagctctggattcagagacttccttttgaaacctgagcttcttcgg
gccattgtcgactctggatttgagcacccttccgaagtgcaacatgaatgtattccccaa
gctatactgggtatggatgttatttgccaagctaaatcaggaatggggaagaccgcagtt
tttgttctatcatcgttacagcaaattgaaccaactccaggacaagttgttgccctagtt
ttgtgtcatacaagggagttagcttaccagatttgtcatgagttcgagaggttcagtact
tatctgcctgatatcaaggttgctgtcttctatggtggtgtcaacatcaaagttcataaa
gatctgctgaaaaatgaatgccctcacattgttgttgggactcctggaaggattttggct
ctgacaagagacaaggacctttcattgaagaatgtgaggcatttcattcttgatgaatgc
gacaagatgcttgaatcacttgacatgaggagagatgtacaggagattttcaagatgacc
cctcatgataagcaagttatgatgttttcagccacactcagcaaagaaatacgcccggtt
tgcaagaaattcatgcaagatcctatggaaatttatgttgatgacgaggccaagttgacc
cttcatggtcttgtgcagcactacatcaaattgagtgaactggagaaaaaccgcaaattg
aatgacctccttgatgctttggacttcaaccaagttgttatctttgtcaaaagtgtgaac
cgggcatctgagttgaacaagctactcgtggagtgcaattttccatctatatgcatccac
tctggcatgtcccaggaagaaaggttaactcgctacaagggttttaaggaggggcataaa
agaattctagtggctacagatttggttggaaggggaattgacattgaacgtgttaacatt
gtcataaactatgacatgccagattctgctgatacatacctgcacagggttggtagagct
ggtcgatttggcaccaagggtcttgcaattacatttgtttcatccgcttcagattctgat
gtgctcaatcaggtccaagagaggtttgaggtggatataaaggagcttcctgagcagatt
gatacatctacatacatgccatcataa
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