Hibiscus syriacus (Rose-of-Sharon): 120119357
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Entry
120119357 CDS
T09559
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03020
RNA polymerase
hsyr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120119357
09124 Replication and repair
03420 Nucleotide excision repair
120119357
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsyr03021
]
120119357
03400 DNA repair and recombination proteins [BR:
hsyr03400
]
120119357
Enzymes [BR:
hsyr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120119357
Transcription machinery [BR:
hsyr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120119357
DNA repair and recombination proteins [BR:
hsyr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120119357
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
120119357
NCBI-ProteinID:
XP_038995099
LinkDB
All DBs
Position
Unknown
AA seq
1189 aa
AA seq
DB search
MEDDSEYDPQLMEDEEDEEITLEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVSE
SAAIEIRPESQHNPGHQSDFVETIYEIKFGQIYLSKPMMTESDGETATLFPKAARLRNLT
YSSPLYVDVAKVVRKKGHDGEEVTETQDFSKVFIGKVPIMLRSSYCTLYQNSEKDLTELG
ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMSKSQNRPPST
MFVRMLARTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQ
MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAREILQKEMLPHIGDEEY
CETKKAYYFGYIIHRLLICALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR
SYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLSLMVYITVGSD
AKPIEEFLEEWGTENFEEISPAVIPQATKIFLNGCWVGVHRNPDMLVTTLRRLRRRVDVN
TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDILALHQRENPEDSGWHELV
AKGFIEYIDTEEEETTMISMTINDLIQARVNPEEAYSETYTHCEIHPSLILGVCASIIPF
PDHNQSPRNTYQSAMGKQAMGMYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD
RSTTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGTASRCTKRDHSIS
LRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGTTYTQEDMP
WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALH
KCGYQMRGFEAMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE
GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKSSFE
CRGCKNKTDVVQVYIPYACKLLFQELMAMAITPRMITKDQAEDQKKKRA
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgacagcgagtacgatcctcaactaatggaggacgaagaagacgaggagatc
acgctggaagacgcgtgggcggttatatccgcttatttcgaagaaaaaggtttggtgcgt
caacagctcgactcttttgatgagtttatccaaaacacgatgcaagagattgtatctgaa
tcggccgctatcgagatcaggcccgagtcacagcacaatcctggtcaccagtccgacttc
gtggagactatctatgagatcaaatttggtcagatctacctaagtaaacctatgatgacc
gagtctgatggtgaaactgctacattatttccaaaagctgcaagattgaggaatctcact
tactcctctccattgtatgtcgatgttgctaaagtagttagaaagaaggggcatgatggt
gaagaagtcactgagactcaagatttttccaaagtgttcattgggaaggttcccataatg
cttcgttctagttattgcacactatatcaaaattcagagaaggatctgactgagcttggg
gagtgtccatatgatcaaggtgggtattttatcatcaatgggagtgaaaaagttctaatt
gcccaagagaagatgagcacaaaccatgtatatgtcttcaaaaagaggcaaccaaacaaa
tatgcatatgtggcagaagttcggtcaatgtcaaagtcccaaaacaggccaccaagtact
atgtttgtgcggatgcttgcgaggaccagtgccaaagggggctcttcagggcagtacatt
cgtgctactcttccttatattcggactgaaattcctatcataattgtgtttcgggctctg
ggatttgttgctgataaggatatactagagcatatatgctatgacttctctgatacccag
atgatggagctgcttcggccttccttagaagaagcatttgtgattcaaaaccagcaggtt
gcactagattatattggtaaaagaggagcaactgttggtgttactaaagaaaagaggatt
aagtatgctagagagatccttcagaaggaaatgcttcctcacattggtgatgaagagtat
tgtgagacgaagaaagcttattattttgggtatatcattcaccgactgcttatttgtgca
cttggccgaagggcagaagatgatagagatcattatggcaacaagaggctggaccttgct
ggtcctttacttggaggcctctttaggatgctctttcggaagttaactagggacgtgaga
tcttatgtgcagaagtgtgtggataatggaaaggatgtgaacctgcaatttgctatcaaa
gcaaaaactattaccagtggtcttaaatactcacttgctaccggaaattgggggcaagca
aatgcagctggtacaagagctggagtgtctcaggtgttgaatcgtttgacatatgcctca
actttgtcacacttgcgaaggctcaattctcctataggacgtgaagggaaattggctaag
ccgcgtcagttgcataattctcagtggggaatgatgtgtccagctgaaacaccagaagga
caggcctgtgggcttgtaaagaatctttccttgatggtatacataacagttggatcagat
gcaaaacctattgaagaatttttggaagaatggggtacagaaaattttgaggaaatttca
cctgcggttattcctcaagctacaaaaatttttctcaatggttgttgggttggtgtgcat
cggaatcctgatatgcttgttacaacattgagacggttgagaagacgggttgatgtcaac
actgaagttggtgttgttcgagatattcgtttaaaagaacttagaatatatactgactat
ggtcgttgcagtcgtccattgttcattgtggagaagcaaaggcttctaattaaaaagaga
gacattcttgcactgcatcaaagggaaaacccagaggacagtggctggcatgaacttgta
gcaaagggatttattgaatatattgatacagaagaagaagagacaacaatgatttccatg
acaatcaatgatcttatccaagcaagagtgaatccagaagaggcttattcagaaacgtat
acccattgtgagatccacccctcattgattttgggcgtttgtgcttcaattataccattt
ccagatcataatcagtcaccacgtaacacctatcaatctgccatgggtaagcaagcaatg
ggtatgtatgtcaccaattaccaattccgaatggatacattggcctacgtgctctactat
ccccaaaagccacttgttaccacacgagctatggaacatctccattttcggcagcttcct
gctggcattaatgctattgtggccattgcctgctattctggatataaccaagaagattct
gttattatgaatcaatcatcaatagaccgtggattcttccgatcacttttcttccgttct
taccgggacgaggagaaaaaaatggggacccttgtcaaagaggattttggccgaccagat
aggtctactactatgggaatgaggcatggctcttacgataaattagatgatgatggtctt
gcacctcctggaacaagagtttcaggtgaggatgtaatcattggaaagaccacacctatt
tcacaggaggaagctcagggtacagcatcacgctgtacaaaacgtgatcatagcataagc
ttacgtcacagtgaaactggcatcgtggaccaagttctattgacaactaatgctgatggg
ttgcgatttgtgaaagtaagagtacgttctgttcggattccccagattggagacaagttt
agcagtcggcatggtcaaaagggaacggttggcacaacttacacccaggaagacatgccc
tggactgtggaaggcatcacacctgatatcattgtgaaccctcatgctattccttctcga
atgacaatcggtcagcttatcgagtgtatcatgggaaaagttgcagctcacatgggcaag
gaaggggatgctactccttttactgatgtcactgtggataatatcagcagagcacttcat
aaatgcgggtatcagatgcgtggtttcgaggcgatgtataacggacacacgggcaggcgg
cttactgcaatgatattcttggggccaacatattaccaaagactaaagcacatggttgac
gataagatccattcaagaggtcggggtcctgttcagattctaacgaggcagcccgcagag
ggacgatcccgtgatggtggacttcgtttcggagagatggaaagagattgcatgattgca
catggtgctgcccatttcctcaaggagagattgtttgaccaaagtgatgcatacagagtg
catgtttgtgagagatgtgggttgattgcgatcgcgaatctgaagaagagctcattcgag
tgcagaggatgcaagaataaaactgatgttgtacaggtttatataccttatgcttgtaaa
ctgctgttccaggagctcatggcaatggcaatcactccgagaatgattacaaaggatcag
gcagaagaccaaaagaagaaacgagcgtga
DBGET
integrated database retrieval system
