Hibiscus syriacus (Rose-of-Sharon): 120119437
Help
Entry
120119437 CDS
T09559
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120119437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsyr03021
]
120119437
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120119437
Transcription machinery [BR:
hsyr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120119437
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
120119437
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
120119437
NCBI-ProteinID:
XP_038995180
LinkDB
All DBs
Position
Unknown
AA seq
984 aa
AA seq
DB search
MAISNELAQKQLPSISERFKALLKQREDELKVSGGVADDDVGETLTTEDIVQLYEIVLSE
LTFNSKPVITDLTIIAGEQREHGEGIADAICARIIEVPVEQKLPSLYLLDSIVKNIGRDY
VRHFSSRLPEVFCEAYRQVNPNLHPAMRHLFGTWSTVFPPSVLHKVEMELQFSQSANQQS
SVVTSLQSSKSPRPTHGIHVNPKYLRQFEQQSGADSNTRHVRGMSAGQKLYGKKHTIGYD
EFDSDHTEVPSSHVGAQRLSSTGNVGRTSVTFGANKPQHFSVSRVSGPLSQSTIGSDRLL
SSEVDDLPSDDSPKRFSEIASPSRPGFDFECGRGNIRDEETREWQKKNFHGDYHNSSESS
LNAYKLSNGNERQTLRALIDAYGNDRGQGMSNSKPLQVERLDVNGLGNKVAPRSWQNTEE
EEFDWEDMSPTLADRRNNEFSVSSVPTFGSIGARPAGLESNRSSHTLVDDSSAIPEDAVP
SLSSGRGLNQTQRSRYPQDAWSSSYPFPQSSHLHAKGRGRDSGISSLGGDKIVSPIEKLP
EGGSQFVKPPAFVPRSASSSLGTVTVGSQPAILPTTTGVWPPVNAHKSQPPTVHSNYSLQ
QHGRNHFNSLNLVMNPGQNKYQYMPEQFDSFESKDQSLTTAPQLPGRRPALQQRNSLHGT
SLQPHFPHEIRDGFLSSAPGPFLPRLLAPPLNHGYAPPMHGGMVPSNPIPVAQPSLVIPN
MPTGSLHFRGGAMPSRPPGPPASQMMPVNQNAGQLLPNQPQGGAFSGLIGSLMAQGLISL
ANPTPIQDSLGLEFDAELHKMRHESSISALYADLPRQCTTCGLRFKSQEEHSTHMDWHVT
RNRMSKNHKQKPSRSWFVSASMWLNGADTLGTGTVPGFLPAEDIVEQKDDEELAVPADED
QSTCALCGEPFDDFYSDETEEWMYRGAVYMNAPNGSIEGIDRPQLGPIVHAKCRSESSVV
PPEDFVGYDGGGSEDSSRRKRLRT
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggccatatccaatgaactagcgcaaaagcaactgccctccatatcggaacggtttaag
gctttattaaagcaacgggaagatgaactcaaggtttccggcggtgttgcagatgacgat
gtgggggaaacgctaactacggaggatattgttcagctttacgagattgtgttatcggaa
ctaacttttaattcgaagccggtaattactgatcttacgatcattgccggtgaacagcga
gagcacggggaaggcattgccgatgctatttgcgcaaggataattgaggttccagtagag
cagaaacttccttctttatatctattagatagcattgtgaaaaacattggccgagactac
gttaggcatttctcttcccgtttgccagaggtattttgtgaggcgtacaggcaagttaat
cctaacttgcatcctgcaatgcgccatttatttggcacgtggtctacagtgtttccgcct
tctgtccttcataaagtcgagatggagttgcaattttctcaatcggcaaaccagcaatca
tctgttgtaacttccttgcagtcttccaaatctcctcgtccaacacatggcatacatgtt
aatcctaagtacctgcgccagtttgaacaacagtcaggtgcagatagtaatactcggcat
gtaagaggcatgtctgctggtcaaaaattgtatggtaaaaaacataccattggatacgat
gaatttgattctgatcatactgaggttccatcttcacatgttggtgcgcaaagattgagt
tcgactggaaatgttgggcgtacttctgttacatttggggcaaacaaaccacaacatttt
tcagtttccagagtttcaggacccttgtcacaatcaacgattggatctgatagactttta
tcatcagaagttgatgatctgccatcagatgattctcccaaaaggttctctgagatagcc
tctccatctcgacctggctttgattttgaatgtggaaggggaaacatcagagatgaggaa
acaagggaatggcagaagaagaattttcatggcgattaccataattcttctgaaagttct
ttgaatgcatacaagcttagtaatggaaatgagcgtcaaacactcagggctttaatagat
gcatatggtaatgatagaggacaaggaatgtctaacagcaaacctctacaggttgaacgg
ctggatgtaaatggattgggcaataaggtggctccaagatcatggcagaatactgaagag
gaagagtttgattgggaagatatgagcccaacgttagcagatcgaaggaacaatgaattt
tcagtgtcatctgttccaacttttggaagtattggagcaagacctgccgggttagaatct
aataggagcagtcacacccttgttgatgattcttcagcaattcctgaagatgcagttcct
tccctgagttcaggtcgtggattaaatcagactcaacgttcgcgttatcctcaggatgct
tggagttcctcatacccttttccccagtcatcgcaccttcatgccaaaggaagaggaagg
gatagtggtatatcctccttaggtggtgacaaaatcgtctctcctattgagaaattaccc
gagggtggttcacaatttgtaaagcctccagcttttgtgccaagatctgcttcttctagc
cttggcactgttactgttggatcccagccagccattttaccaacgacaactggggtatgg
cctccggtaaatgctcataaatctcaaccaccaactgtgcactctaactattcactgcag
cagcatggtaggaatcactttaattcactgaatcttgtcatgaatccgggccaaaacaaa
tatcaatatatgcctgaacagtttgatagttttgaaagcaaggatcaaagcttgacaacg
gcgccacaattgcctggacgacgtcctgcattgcaacagcggaactcattgcatggaact
tctttgcagccacactttcctcatgagattcgtgatggtttcctttcatcagcacctgga
cctttcctgcctcgcttattggcaccacccttgaatcatggatatgctcccccaatgcat
ggtggtatggtcccatctaacccaatacctgttgcacagccttctttagtgatcccaaat
atgcccactggctcattacatttccgcgggggagccatgccatctcgccctcctggtcct
ccagcgtctcaaatgatgcctgtcaatcaaaatgcaggtcaactgcttcctaaccaacct
cagggtggtgcattttctggtttgattggttctctcatggctcaaggtttgatttcattg
gcgaatccaactcctatacaggattctttgggacttgagtttgatgcagaactccacaag
atgcgacatgaatcttctataagtgctttatatgctgatcttccaaggcagtgcacaaca
tgtggccttcggttcaagtcccaagaggaacatagtactcatatggattggcatgtgaca
agaaaccggatgtctaagaaccataagcagaaaccttcccggagttggtttgtgagtgct
agcatgtggctcaatggtgcagacactttgggaactggtacagttcctgggtttttaccc
gccgaggacatagtagaacagaaggatgacgaagaattggcagttcctgctgatgaagat
cagagtacatgtgcattatgtggtgagccttttgatgatttttatagcgatgaaacagag
gagtggatgtataggggggctgtctacatgaatgcacccaatggatcaattgaaggcatt
gataggccacagttaggtcccatagtgcatgcaaaatgcaggtcagaatctagtgtggtt
ccccctgaagattttgtagggtatgatgggggaggttctgaggacagtagtcgaagaaaa
agattgcggacttaa
DBGET
integrated database retrieval system
