Hibiscus syriacus (Rose-of-Sharon): 120119642
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Entry
120119642 CDS
T09559
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120119642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120119642
03041 Spliceosome [BR:
hsyr03041
]
120119642
03009 Ribosome biogenesis [BR:
hsyr03009
]
120119642
03016 Transfer RNA biogenesis [BR:
hsyr03016
]
120119642
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120119642
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
120119642
Spliceosome [BR:
hsyr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120119642
Complex C
U4/U6.U5 tri-SnRNP related factors
120119642
Ribosome biogenesis [BR:
hsyr03009
]
Eukaryotic type
Pre-60S particles
Helicases
120119642
Transfer RNA biogenesis [BR:
hsyr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
120119642
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
Zot
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
120119642
NCBI-ProteinID:
XP_038995381
LinkDB
All DBs
Position
Unknown
AA seq
990 aa
AA seq
DB search
MGTLKRKLGEEASSESPPTLQKKIHHGGVASVLTEEATGCVHDVSYPEGYVPSASTANLP
PDSKPAKEFPFTLDPFQSEAINCLNNGESVLVSAHTSAGKTVVALYAIAMSLKNNQRVIY
TSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEIVREVA
WVVFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHKQPCHIV
YTDYRPTPLQHYIFPAGGDGLFLVVDEKGKFREDSFQKALNALVPTSESDKKRNNGKSQK
GLVMGKVSEQSDIFKLVKMIIQRQYDPVIIFSFSKRECEFLAMQMAKMDLNDDDEKGNVE
TIFWSAMDMLSQDDKKLPQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFA
TETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDARGICILMVDE
RMEPSTAKMMLKGNADSLNSAFHLSYNMLLNQLRCEDSDPESMLRNSFYQFQADRAIPDL
EKQVKALEEERESMIIEEEDSLKNYYNLIQQYKSLKNDIREIVFSPKYCLPYMKSGRPVC
IQLIDDETSPSFSIEDHVTWGVLMDFHRVKSIIEDDANKRPEDASYALDILTRCNVSKDG
VGKKTIKIVPLKEPGEPLVVSVPLSQVTSLSSARLTIPKDLLPMEARENALKKLSEFISR
YPNGMPLDTDDNIHSNSYKKAVRRLEALESLFEKHEIAKSPLIEQKLKLLNRKEELTSKI
RSIKKKMRSSTVLAFKDELKARKRVLRRLGYITSDDVVELKGKVACEISSADELILTELM
FSGVLKDIKPEEMVSLLSCFVWQEKLQDAAKPREELELLFTQLQDTARKMAKVQHECKVQ
IDVESFVSPFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAAK
SIGETELETKFEMAVSKIKRDIVFAASLYL
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atgggcaccttgaagaggaagttgggtgaggaggcatcctccgagtctcctccaacgctg
cagaagaagatacatcacggtggagtcgcctcggtgttgacggaggaagccaccggatgt
gtccatgatgtttcataccctgaaggttatgttccttctgcttccaccgcaaaccttcca
cctgactctaaacccgccaaggagttccctttcacgcttgacccctttcagtctgaagct
atcaattgcctcaataatggcgaatctgtcctggtatcggcacatacatcagcaggaaaa
actgtagtagctttgtatgcaattgccatgtctttgaagaataaccagcgtgttatatat
acttcacctattaaggctctcagcaatcagaagtacagggagtttaaagaggagttttcc
gatgttggtttgatgactggagatgttaccatcgatcctaatgcttcgtgcttggtgatg
accacggaaatctggcgtagtatgcagtataaagggtcggagattgttcgtgaggtagca
tgggttgtttttgatgaagtgcattacatgcgtgatcgtgagaggggtgttgtctgggaa
gagagtattgttatggcaccaaagaactctcggtttgtatttctttcagctactgtgcct
aatgccaaggagtttgctgattgggtagctaaggttcacaagcaaccatgtcacattgtt
tacaccgattatcggccaaccccacttcagcattatattttccctgctggaggtgatggt
ctatttttggtggtagatgagaaaggaaaatttcgtgaggatagttttcagaaagcttta
aatgcactagttcctacaagtgaaagtgacaagaaaagaaataatggtaagtcacagaag
gggttagtgatgggaaaagtcagtgaacaaagtgacatcttcaagttggtgaaaatgatc
attcagcgacagtatgaccctgtgataattttcagctttagcaaaagggaatgcgagttt
ctagcaatgcagatggcaaagatggatttaaatgatgatgatgagaaaggaaatgtagaa
acaattttctggagtgccatggatatgctttcccaagatgataagaagctacctcaggtg
tcaaacattttaccgcttttgaaacgaggaattggtgtgcatcactctggtttgcttccc
attctaaaggaagtgattgagatattatttcaggaaggtctgattaagtgtttgtttgcc
acagagaccttcagtattgggttaaacatgcctgctaaaactgttgtgtttacaaatgtt
cgtaaatttgacggggacaagtttagatggatatccagcggagaatacatccagatgagt
ggccgtgctggtcgtcgaggtattgatgcacgtggaatatgcattcttatggtggatgaa
aggatggaaccatctacggctaaaatgatgctcaagggaaatgctgatagtttgaacagt
gccttccacctaagctacaatatgctattgaatcaattgcgttgtgaagattctgatcct
gaaagtatgcttcgtaattcattctatcaattccaagctgatcgagcaattcctgacctt
gagaaacaagtaaaggctcttgaagaagagagggaatcaatgataattgaagaagaagat
agtttgaaaaattattataatctgattcagcaatacaaaagtttgaagaacgatattcgt
gaaattgtgttctctccaaagtattgtttaccctatatgaaatctggcaggcctgtatgt
atacagttgattgatgatgaaacatctccatctttctccattgaggaccacgttacctgg
ggtgttttaatggactttcatagagtgaaaagtattattgaagatgatgccaataaaaga
ccagaagatgcaagttatgcccttgatattcttacaaggtgcaatgtgagtaaagatggt
gttgggaagaaaacaattaagatcgtccctttgaaagagcctggagaacctcttgttgtt
tctgtgcctctttctcaggttactagtttaagtagtgcacgtttaaccataccgaaagat
cttctgcctatggaagctcgagagaatgctttgaagaagctttcagaattcatttctaga
taccctaatggaatgcctctggataccgacgataatattcatagcaactcatataaaaag
gctgtccgtaggttggaggcactagagagcctgtttgaaaagcatgaaattgcaaaatcc
ccgcttatagagcaaaaacttaaactgttaaacaggaaggaagaattgacatccaagatc
agatcaattaagaaaaaaatgcgttcgtccacagtattggcttttaaagatgagcttaag
gccagaaaacgggttctaaggaggctaggatatattacaagtgatgatgttgttgaattg
aagggcaaggttgcttgtgagatcagtagcgctgatgagttgattctgactgagcttatg
ttcagtggggttctgaaagatataaagccagaagaaatggtctctcttctctcttgtttt
gtttggcaggagaagctccaagatgctgcaaagcccagggaggaactagagctgctcttt
acacaactacaggatacagcacggaagatggccaaagttcagcatgaatgcaaggttcaa
atcgatgtggagagctttgtaagtccatttcggcctgacattatggaagctgtatatgct
tgggccaaaggatccaagttctatgagatcatggaaattactcaggttttcgagggcagc
ttaataagagccatcagacgactggaagaagttcttcagcagcttattttagcagccaag
tccattggagagacagaacttgaaacaaaatttgaaatggccgtctctaaaattaaaaga
gacatagtatttgcagcatctctgtacttgtag
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