Hibiscus syriacus (Rose-of-Sharon): 120119700
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Entry
120119700 CDS
T09559
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03013
Nucleocytoplasmic transport
hsyr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120119700
03015 mRNA surveillance pathway
120119700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120119700
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120119700
mRNA cycle factors
P-body specific factors
120119700
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
120119700
NCBI-ProteinID:
XP_038995439
LinkDB
All DBs
Position
Unknown
AA seq
462 aa
AA seq
DB search
MKEPLRKTKVVIRHLPPSVTQSFFFSKIGERFSDRYNWFFFRLGKSSHKQQTYSRAYINF
KRPEDVFEFAEFFDGHVFVNEKGTQFKAIVEYAPSQRVPNPSNKKDGREGTIFKDPDYLE
FLKLISKPVENLPSAEIQLERKEAELSGAPKETPVVTPLMEFVRQKRAAKSGTQGSITIR
KVGRKIAAASAGKSGSSSKSFDKKKYILKDIAKGAKMSNFFVASKQEDQSMTSVAKEIRE
NGTVCSIDGPVSGITFSADSGKKKILLVKPKDREAPNVPEGVSEQQGASSPAGNTSGPTA
SRQGQRRKAGGKLIRSILLRNEAGQNQSSEAVQPQQKIQAMSPDTAKKLSQPTNTRMGSG
SEKHEKRTRNRDRPDRGVWAPRADFSQSNEERLTPFVLQSAQSSHSSMEGSNRQFGRGPA
AHTIKDDGSVISNEVKPSKRGGPTSSGAHEKQVWVQKSSSGY
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagccgctgcgtaaaacgaaagtggtgataaggcatctgccgccgtcagttacc
caatcgtttttcttttctaaaatcggcgaacgtttctctgatcgctacaattggttcttc
ttccgtctcggcaagtccagccataaacaacagacttactctcgagcctacataaacttc
aagagacctgaagatgtctttgagtttgctgaattctttgatggacatgtatttgttaat
gagaagggtactcaatttaaggccattgttgaatatgcgccttctcagcgtgtaccaaat
cctagcaataaaaaggatggtcgtgaagggaccattttcaaagatcccgattatctggaa
tttctcaaattgatttcaaaacctgttgagaatcttcctagtgctgagattcagttggag
agaaaagaagctgaactatctggtgctccaaaggaaactcctgttgttacaccactaatg
gaatttgtgcgtcagaagcgtgctgccaaaagtggaactcaggggtcaataactataaga
aaggttggcagaaaaattgctgctgcatctgcaggcaagtctggatccagtagcaagagt
tttgacaaaaaaaagtatattctaaaagacattgcaaaaggtgcgaaaatgtccaatttt
tttgtagcatccaagcaagaggatcaatcaatgacttctgtcgcaaaagaaataagagag
aatggaactgtctgcagcattgatgggcctgtaagtggaattactttttctgccgactct
ggcaagaaaaagatccttctcgtgaaaccaaaagaccgagaggctcctaatgtgccagag
ggtgtatctgaacaacaaggtgcatcgtctcctgcaggaaatacaagcggtccaactgct
tcaagacagggtcaaagacgcaaggctggtggaaagttaataaggagcatacttttgaga
aacgaagcaggccaaaatcaatcttcagaagcagttcagcctcagcagaaaattcaagct
atgagtccagacacagctaaaaaactttcccagccaactaatacacgaatgggttctgga
agtgagaagcatgaaaaacgtacaagaaatagagatagaccggatcgtggtgtatgggcc
cctcgtgctgatttttcacaatctaatgaggagcgtctgacaccgtttgtgttacaatca
gcacagtcttctcacagttccatggaaggttccaatcggcaatttggtcggggcccagca
gctcatacaattaaagatgatggatctgtcatatcaaatgaggtcaagccttccaaaaga
ggaggtcctacaagctctggagcccatgagaaacaagtttgggttcagaaatcatcctcg
ggttattag
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