KEGG   Hibiscus syriacus (Rose-of-Sharon): 120120324
Entry
120120324         CDS       T09559                                 
Name
(RefSeq) splicing factor 3B subunit 1-like
  KO
K12828  splicing factor 3B subunit 1
Organism
hsyr  Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hsyr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120120324
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hsyr03041]
    120120324
   03036 Chromosome and associated proteins [BR:hsyr03036]
    120120324
Spliceosome [BR:hsyr03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    120120324
 Complex B
    120120324
 Complex C
   U2 SnRNP specific factors
    120120324
Chromosome and associated proteins [BR:hsyr03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    120120324
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_EF3_N HEAT_ECM29 HEAT_2 Htt_N-HEAT_1 Cnd1 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N
Other DBs
NCBI-GeneID: 120120324
NCBI-ProteinID: XP_038995907
LinkDB
Position
Unknown
AA seq 1268 aa
MDIDNEIAKTQEERRRKEEELASLTSLTFDRDLYGGTDRDAYVSSIPVNDDDDANLDSMD
SEVARKLASYTAPKSLLKEMPRGEEDDNSLGFRKPAKIIDREDDYRRRRLNQVISPDRHD
AFAAGEKTPDPSVRTYADVMREQALKREKEETLRAIAKKKKEEEEAAVVEKESGGTAAAV
PKRRNRWDQSQDDGSSAAKKAKTSDWDLPDATPGIGRWDATPTPGRVSDATPSVGRRNRW
DETPTPGRVADSDGTPAGGITPGATPAGVTWDATPKGLVTPTPKRQRSRWDETPATMGSA
TPMAGATPNVPLTPGVTPFGGTDLQTPTPSNLRGPMTPEQYNLLRWEKDIEERNRPLTDE
ELDAMFPQEGYKILEPPSSYVPIRTPARKLLATPTPMGTPLYAIPEENRGQQFDVPKEPP
GGLPFMKPEDYQYFGSLLNEENEDELSPEEQKERKIMKLLLKVKNGTPPQRKTALRQLTD
KAREFGANALFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPL
LIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGI
PALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLKSLVEIIEHGLNDENQKV
RTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDAIY
ASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEAEYIRNDILPEFFRNFWVR
RMALDRRNYRQLVETTVEMANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVTNLGA
SDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRL
NNKSAKVRQQAADLISRIAVVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAI
VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICF
ELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVA
ETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDR
DLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVTEAIEGMRVA
LGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPILEDEQSSEQNNIYS
RPELMMFV
NT seq 3807 nt   +upstreamnt  +downstreamnt
atggatattgataacgagatagcgaaaacccaagaagagcgaaggcgaaaagaggaggaa
ctcgcttcgcttacctccctaactttcgaccgggatctttacggcggaacagacagggat
gcttacgtttcctccatccctgttaacgatgacgatgatgcgaatcttgattccatggat
tctgaggttgctcggaagctcgcctcttatacggcccctaaatcactcctcaaggagatg
ccccgtggtgaagaagatgataactcgttagggtttaggaaacccgcgaaaattattgac
cgtgaagatgattataggaggaggaggttgaaccaagtcatttctccggatagacacgat
gcatttgcggccggggagaagactccggatccctccgtgaggacttatgctgatgtgatg
agagagcaggcattgaagagggagaaggaagagactttaagagctatagcaaagaagaaa
aaggaggaagaggaggccgctgtggtagagaaagagagtggtggtacagctgctgcggtg
cctaagaggaggaatagatgggaccagtctcaagatgacggtagttctgcagcaaagaag
gctaaaacgtctgattgggatttgcctgatgcaactcctggtattgggcgttgggatgct
accccaacgcctgggagagtttctgatgcgactccatcagttgggaggaggaataggtgg
gatgagacaccaacacctgggcgggtggctgattcagatggaaccccagcaggtggaatt
acccctggtgcaacaccagctggggttacatgggatgctactccgaaagggttggttact
cctacgccaaaacgacagagatctaggtgggacgagactcctgcaaccatggggagtgca
actccaatggcaggggctacaccaaatgttcctcttacacctggagttactccttttggt
ggtacagatttgcaaacaccaactccaagtaatcttcgtgggcctatgactccggagcag
tataatttgttgaggtgggagaaggatattgaggagaggaatcggccattgactgatgag
gagcttgatgctatgttcccacaagaagggtataagattttggaaccaccttcatcttat
gtgcctattaggacacctgctcgaaagcttcttgctactccaactcctatgggaactcca
ctttatgctatacccgaggagaatcgtgggcagcaatttgatgtgcctaaggaaccacct
ggtgggttgccatttatgaagcctgaggattatcagtattttgggtcattattgaatgag
gaaaatgaggatgagctgtctccagaagagcagaaggaacggaagatcatgaaacttttg
ttgaaggtaaagaatggaacaccaccacagaggaaaactgctctgaggcagctcactgat
aaggcaagggaatttggtgctaatgcattatttaataggattctgccgttgcttatgcaa
cctacattggaagatcaggagaggcatctattggttaaggttattgacagggtgctgtat
aaattggatgagttggttaggccttatgtacacaagattcttgttgtgatcgaacccttg
ttgattgatgaagattattatgcacgtgtggagggtagagaaatcatttctaatctcagt
aaggcagctggtttggctactatgattgctgcaatgcgtcctgatattgacaacattgat
gaatatgttaggaatacaactgctagagcttttagtgttgttgcttctgcacttgggatt
cctgcacttctaccatttttgaaagctgtgtgtcagagtaagaagtcatggcaagctagg
catactgggatcaagattgttcagcagattgctattttgataggctgtgctgtgcttcct
catttaaagtccctagtagaaatcatagaacatgggttgaatgatgagaatcagaaggtg
aggacaattactgctttgtctctggctgctcttgctgaggctgctgcgccctatggcatt
gaaagctttgactcagttttaaaaccattgtggaagggtatcaggtctcaccgaggtaaa
gtattggctgcatttttgaaggccatcggttttatcattcctttgatggatgctatttat
gctagttactatacaaaagaagttatgttcattcttatccgtgagttccagtctcctgat
gaagaaatgaagaagattgtgctcaaggtggtgaagcaatgtgtgagcactgagggtgtt
gaagccgagtacattaggaatgatattctacctgagttcttcaggaatttctgggtgaga
aggatggctttagataggagaaattataggcagcttgtggagacaactgttgagatggca
aataaagtaggtgttgctgatatcgtagggagaatagtggaggatctgaaggatgagagt
gaaccctacagacgtatggtaatggaaacaattgagaaggtggttacaaatttgggtgca
tctgatattgatgccaggttggaggaacttttgattgatggtattctttatgctttccaa
gagcagactagtgatgatgccaatgtgatgcttaatggatttggtgctgttgtgaattca
ctgggacagagagtgaaaccttatcttccccagatctgtggtaccataaaatggcgcttg
aataacaagagtgccaaggtcaggcagcaggcagctgatcttatttcaagaattgcagtg
gttatgaaacagtgccaagaggaacaattgatgggtcatcttggggttgttctatatgag
tatctgggtgaggagtaccctgaagttttgggatctattttaggagccctcaaggcaatt
gtcaatgttattggtatgacaaaaatgacacctcctatcaaggatttgcttccaaggttg
acacctattctgaaaaataggcatgagaaggtccaggaaaactgcattgatctggttggt
cgtattgctgatcgaggtgcagagtttgtaccagctagggagtggatgaggatttgtttt
gagcttcttgagatgcttaaagctcacaagaagggtattcggagagctactgtcaatact
tttggatatattgctaaagccattggcccacaagatgtcttggctactctattaaacaat
ctcaaagtacaagaacgccagaaccgtgtttgtactactgtggcaattgcaattgttgct
gaaacatgttctcctttcacagttttaccagcattgatgaatgagtaccgtgtgccagaa
cttaatgtgcagaatggtgtcttgaaatctctttccttcctgttcgagtatattggtgaa
atgggtaaagattacatctatgctgtgactccattacttgaggatgctctcatggataga
gatttggttcacaggcaaactgcagcctcagctgtgaagcacatggctttgggtgtggcc
gggttaggttgcgaggatgctttagtccacttgctgaactatgtttggcccaacatattt
gagacttcccctcatgtaatcaatgctgtcacggaggctattgaagggatgagggtagct
ttaggtgctgcagtggtgctgaactattgtctccagggtctcttccatcctgctcggaag
gttagggaagtatattggaagatatataattcactgtatattggagctcaagatgctctt
gttgcagcatatcctattctagaggacgaacagagtagtgagcagaacaacatatacagt
agacccgagttaatgatgttcgtataa

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