Hibiscus syriacus (Rose-of-Sharon): 120121004
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Entry
120121004 CDS
T09559
Name
(RefSeq) LOW QUALITY PROTEIN: protein CHROMATIN REMODELING 8-like
KO
K10841
DNA excision repair protein ERCC-6
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
120121004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hsyr03036
]
120121004
03400 DNA repair and recombination proteins [BR:
hsyr03400
]
120121004
Chromosome and associated proteins [BR:
hsyr03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
120121004
DNA repair and recombination proteins [BR:
hsyr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
120121004
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
Motif
Other DBs
NCBI-GeneID:
120121004
NCBI-ProteinID:
XP_038996419
LinkDB
All DBs
Position
Unknown
AA seq
1221 aa
AA seq
DB search
MEEDRILLSSLGVTSANPEDIERDILAKAENDAGDGSEVGGSTEEEPTDKSEGNDPSSTA
NQAKLLNKLRAVEFEIDAVASTVEEGKDVASGDDDAKDLFLEEGVREDDESATKLPSRDS
TLQRALATDRLKSLKHTKAQLEKQLSGLLNENLSKGIKHDKLLKDLVKEEPKLKRKSKET
QKPTKDQGKKKKTVSFNDDVDFDAVLDAASAGFVETERDELVRKGILTPFHKLEGFERRL
QQPGTSNEPVPFEEDENDDLVSASVARAAKSISEAAQVRPATKLLDSDALPKLDDAPTFP
FQRLKKPLKFPQAKEVEKNKGSKRKKKRPLPDKKWRRRISREEQDVGEGEDVRDDLTSHD
EEENQEASEDMDDNDPSYVTLEGGLKIPETIFCKLFDYQKVGVQWLWELHCQRAGGIIGD
EMGLGKTVQVLSFLGALHFSNLYEPSIVVCPVTLLRQWRREARRWYSKFHVEILHDSAQD
PAYKKKQTKSDGESDDESEGSVDSDYKGNFSSKSRKKWDSLINRVLQSKSGLLITTYEQL
RLLGDKLLDIEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLSELWSL
FDFVFPGKLGVLPXFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLVMPYLLRRMKA
DVNAHLPKKTEHVLFCSLTAEQRSVYRAFLASSDVEQILDGRNSLYGIDVMRKICNHPDL
LDREHSCQNPDYGNPERSGKMKVVAQVLHVWKDXGHRVLLFAQTMQMLDILENFLTTSDY
CYRRMDGQTPVKQRMALIDEFNNSDDIFIFILTTKVGGLGTNLTGADRVIIFDPDWNPST
DMQARERAWRIGQKKDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARD
MKDLFTLNDDGESGSTETSNIFGQLSEDVNIVGMKEHKQHKQEHSKAAVSRDAHTASXKR
NCSNSGHSKREGKEKDDHSDGEVDEEKNILRSLFVAQGIHSAVNHDAIMNAHDEEKMRLE
EQASQVAQRAAEALRKSRMLRSHDGISVPTWTGKSGAAGAPSAVRKKFGSTLNSHLVKST
SEASSSIIAAGAAAGKALTSAELLAKIRGNQEQAVGAGLEHQSGLASSSSNSRRPAVNGT
SSSRSSSNVSCVQPEVLIRRICTFIQQRGGSTDSASIVDHFKDQIPSNNLPLFKNLLKEI
AKLEKDRNGSRWVLKPEYRKQ
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggataggatcttgttgagtagtttaggcgtcacatctgcaaatcccgaggat
atcgaacgggatatcttagccaaggcggaaaacgatgcaggggatggtagtgaagtagga
gggagcactgaggaggaacctactgataagtcggaaggcaatgacccatcatcgactgcc
aaccaagcgaaactcttgaataaattgagggcggtggaatttgaaatagacgctgttgca
tccactgttgaagaggggaaagatgttgctagtggtgatgatgatgcaaaggacttgttc
ttggaggaaggggttagagaggatgatgaaagtgctacaaagttaccttcacgcgattca
acccttcagcgtgcgctagctactgatagactaaagagcctcaagcacactaaggctcaa
cttgagaaacaactgtctgggttactcaatgaaaatttgtctaagggcataaaacatgac
aagttgttgaaagacttggtgaaggaagagcctaagctgaagaggaaatctaaagaaacc
caaaagcctaccaaagatcaagggaagaagaagaaaacagtttcttttaatgatgatgtt
gattttgatgcagtgttagatgctgcatctgcaggattcgtggaaacagaaagggatgaa
ttggtgcggaagggaatattaactccttttcataagcttgagggatttgagcgccgtctt
caacagcctggtacatctaatgagcctgtgccttttgaagaagatgagaatgacgacctt
gtttccgctagtgttgctagagctgcgaagtccatatccgaggctgcacaagttcgcccg
gcgacgaaactgcttgattccgatgctttgccaaaacttgatgatgcacccacctttccc
tttcaaaggctaaaaaaacctttaaagtttcctcaggcaaaagaggtagagaagaataaa
ggctcaaaacggaaaaagaagaggccgttgcctgacaagaaatggagaaggcggatatct
cgtgaggaacaggatgtaggagagggagaagatgtgagggatgacttgacttcccatgat
gaggaggaaaaccaagaggcttcagaggatatggatgataatgacccttcttatgtgaca
cttgaaggtgggttaaaaatcccggaaaccattttctgtaaactttttgactatcaaaaa
gtaggagtgcagtggttgtgggaactgcattgtcaaagggctggtggaattattggggat
gaaatgggtcttggcaaaactgtccaggtcttgtcttttcttggagcattgcacttcagt
aacctgtatgaaccaagcattgttgtctgccctgtaacactcttgcgacaatggagaagg
gaggcacgtagatggtattcaaaatttcatgttgagatactacatgattctgctcaggat
cctgcttataagaagaagcaaaccaaatctgatggagaaagtgatgatgaaagtgaaggt
tctgttgacagcgactacaaagggaacttttcttctaaaagcagaaaaaaatgggattct
ttgataaatagagttttgcagtcgaaatctgggttgttgattacaacttatgagcaactc
cgactgctaggggacaagttgcttgacatagaatggggttatgcagttttggatgaagga
caccgtatccgaaatccaaatgctgaaatcactctagtttgtaaacagcttcagacagtt
caccgtataataatgactggtgcaccaattcagaacaagcttagtgaactatggtcatta
tttgattttgttttccctggaaagttgggtgtcttgcctngttttgaagcagagtttgct
gtccctatatctgttggtggatatgccaatgcttcaccattacaagtatctacagcctac
aggtgtgctgttgtcctccgtgatttggtcatgccttatctcctccggcgcatgaaggct
gacgtgaatgctcatctgcctaaaaagacagaacatgtacttttttgtagccttactgct
gaacaaagatctgtctatagagcatttcttgctagctcagacgtggaacagatactggat
gggagaaattctctttatggaattgatgtgatgcgtaagatctgcaatcatcctgatctg
cttgatagagaacattcctgccagaatccagattatggaaatcctgaacgaagtggaaaa
atgaaagtagtcgcccaagtgctccatgtttggaaggatncagggcatcgtgttctttta
tttgctcaaacaatgcaaatgctcgacattcttgaaaacttcttgaccactagtgattat
tgctaccgaagaatggatggacagactcctgtaaaacagagaatggccttgatagatgaa
tttaacaactctgatgatatatttattttcattttgaccacaaaagttggtggtttagga
acaaatttaacgggtgcagacagggtgatcatatttgaccctgattggaacccttcgaca
gacatgcaggccagggagcgtgcttggcgtattggccagaaaaaagacgtaactgtatat
agattgattactcgcggaacaattgaagagaaggtgtaccatcggcagatttacaaacat
tttcttaccaataagatattgaagaacccccagcagagaaggttctttaaagctcgagat
atgaaggatcttttcaccctgaatgatgatggagaaagtgggtcaaccgaaacatctaat
atttttggccagttgtctgaagatgtaaatattgtaggtatgaaggaacataagcagcat
aagcaggaacattcgaaagcagctgtttctcgtgatgctcatactgccagtnagaaaagg
aattgttcaaatagtggtcattctaagagagaaggaaaagaaaaagatgatcatagtgat
ggcgaagtagatgaagaaaaaaacattctgaggagcctttttgttgcccaaggaatacat
agtgctgtgaaccatgatgctataatgaatgcccatgatgaggagaagatgaggctggaa
gaacaggcttcacaggtggcacaaagggctgcagaagcactacgcaaatcacgaatgctt
cgaagccatgatggtatttctgttcctacttggactgggaaatcgggagccgctggtgca
ccatcagcagtaagaaagaaattcggctcaactctgaactctcatttagtaaaatccaca
agtgaggcatctagcagtatcatagctgctggggctgctgccggcaaggcgttaacttca
gcagaattgctagctaaaatccgtggaaaccaagaacaagccgtcggtgctgggcttgaa
catcagtctggcttggcttcaagttcatctaactccagaagacctgccgttaatgggact
tctagttctaggtcatcttcaaacgtatcctgtgtgcaacctgaagtactaatacgtcgg
atatgtacatttatacaacaaagaggcggtagcacagattcagccagcattgtcgatcac
ttcaaggaccaaataccctcgaacaatctgcctctgttcaagaatctattgaaggaaatt
gctaaactagagaaggatcgaaatggatcacgttgggttctaaagcccgagtatcggaag
cagtaa
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integrated database retrieval system
