Hibiscus syriacus (Rose-of-Sharon): 120122409
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Entry
120122409 CDS
T09559
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus-like isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03013
Nucleocytoplasmic transport
hsyr03015
mRNA surveillance pathway
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120122409
09122 Translation
03013 Nucleocytoplasmic transport
120122409
03015 mRNA surveillance pathway
120122409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120122409
03041 Spliceosome [BR:
hsyr03041
]
120122409
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120122409
Spliceosome [BR:
hsyr03041
]
Complex C
Other components
EJC/TREX
120122409
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
120122409
NCBI-ProteinID:
XP_038997458
LinkDB
All DBs
Position
Unknown
AA seq
728 aa
AA seq
DB search
MSSKYQILDNRPIDQWKVTELKEELKRRKLTTRGLKEDLVKRLDEALRIERENTENEEDN
GLNSDTQPIDEGGIEKVMSDIAETVKDVVDHSGSEIKKESRVKVQVDINESAAALGHEGV
LVRDSMVQEELIAQATTVQTEITVTKDVVSEVSMVGQPQDLQSSGQNEDVNTDIKLESED
PKLQLETEDPKAWLKNEDPKPQVQNESPKAEEPKGELECVGSKPQLESDDLKPQLDIEDS
KVHPENDDSKAAHEDDMRDSSAPNIQVSEVSPNLGFQVKSDSIPTDSVSNNEKIEIKDNI
IADNVKLDLDVIKPEMVEPPSSNVVPGSGESHPMDVGGPPEIKAPVDERDDKNATNVDMS
NKNDSAEMAYSEKLNLDRSSGDDSMEEDVLESKQIDSKYSTDETGVKREKNGVPIIKEKS
YVRIIGDDLSADKKNVFVENKSGSFVPAGKRKLHDQETVENNELSKRRKWNSDNIKVPEH
QGSNLIPTSTPKGTTQPTAFRRNFSRSDSMASEDTPKERVVPPSQKAPTTSLRIDNFVRP
FTLKAVQEFLGITGTVTSFWMDHIKTHCYATYSSVEEAIDTRNAVYNLQWPPNGGRLLVA
DFVDPLEVKTRVDVPPQTPTTPGTYGSTAPQAQPASQPQPSPRQQISRPQLPPPSALPPP
PPPPLSNPPPVRERLPLPPPPPEKLDPPIVTLDDLFWKTKATPRIYYLPLSDEQVAAKQA
GEGRNMKQ
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaaagtaccaaatacttgacaatagaccgattgatcaatggaaggttactgag
ttgaaagaagagcttaaaaggaggaaattgacaactcggggcttgaaggaggatttggta
aaacgtttggatgaagctcttcgaatagagagggaaaatactgaaaatgaggaagataat
ggtttaaattctgatacacagcctatagatgagggagggattgaaaaggttatgtcggat
attgctgagacagttaaagatgttgtggatcatagtggaagtgagatcaagaaggagagt
agggtgaaggttcaggttgacattaatgagagtgcagctgctttgggtcacgaaggagtt
ctggtaagggacagcatggtgcaagaggagctcattgctcaagctaccactgttcagact
gagataacagttaccaaggatgtggtatctgaggtatcgatggttggacaaccacaagat
ttgcagagctcaggacaaaacgaggatgtgaatactgatatcaaattggagtctgaggat
cctaagctccagttggagactgaggatccaaaggcctggttgaagaatgaggacccaaag
cctcaggtgcagaatgagagtccaaaggctgaagaacccaagggcgagctggagtgtgtg
ggttcaaagcctcagctggagagtgatgatttgaagccccaactggacattgaagattcg
aaggtgcacccggagaatgatgattcaaaagctgcacatgaggatgacatgcgtgattct
tctgctccgaacatccaggtatctgaggtcagccctaatttagggtttcaagtaaaatct
gattctattcctactgattctgtgtcaaataatgaaaagattgaaataaaggataacata
attgctgataatgtcaaattagacctagatgttataaagccagagatggtggaaccacca
tccagcaatgttgtcccaggtagtggtgaatcacatccaatggatgttggaggaccacct
gagatcaaggcacctgttgatgaaagagatgacaagaatgctacaaatgtagacatgagc
aataaaaatgatagtgcagagatggcatactcagaaaaattaaatttagatagaagttct
ggcgatgactctatggaggaggatgtgcttgagagtaaacaaattgattctaaatatagt
accgatgaaacgggagtaaagagagaaaaaaatggagtacctattatcaaggagaaaagt
tatgttcgtattataggagatgatttatctgcagataaaaagaacgtctttgttgagaat
aagagcggttcttttgttcctgccggaaaaagaaagcttcatgatcaggaaactgttgag
aacaacgagctatcaaaaagacgcaaatggaactctgacaatataaaagttccagaacat
caaggttccaatcttatccccaccagcacacctaaaggcacaactcaacctactgctttc
agacgcaacttctctagatcagactcaatggcaagtgaagatacacctaaggaacgagtt
gttcccccttctcaaaaagctccaacaacttccctcagaattgataattttgttcgccct
tttaccttgaaagctgtacaagaatttcttgggataactgggactgtaacgagtttctgg
atggaccacattaagacccattgctatgccacatattcttctgtagaagaagcaatagac
acacgaaatgctgtttacaacctgcaatggccacctaatggtggacgtctattggtggca
gactttgttgatccactggaagttaaaactcgggttgatgttccacctcagactccaact
actcctgggacttatggttctacagctcctcaagctcaacctgcttctcagccccagcct
tcacctcgtcaacagatttctagaccgcagctaccaccaccttctgcacttccaccacca
ccgccaccgcctttgtctaaccctccaccagttagagaacggctccctcttccgccacca
cctcctgagaaactagatcctcctattgtcactctggatgatctgttttggaaaaccaaa
gcaactccccggatctattatttgccattgtcggatgaacaagttgcagcaaagcaagca
ggagagggcagaaacatgaagcagtag
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