Hibiscus syriacus (Rose-of-Sharon): 120123266
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Entry
120123266 CDS
T09559
Name
(RefSeq) LOW QUALITY PROTEIN: DNA polymerase delta catalytic subunit-like
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03030
DNA replication
hsyr03410
Base excision repair
hsyr03420
Nucleotide excision repair
hsyr03430
Mismatch repair
hsyr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120123266
03410 Base excision repair
120123266
03420 Nucleotide excision repair
120123266
03430 Mismatch repair
120123266
03440 Homologous recombination
120123266
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hsyr03032
]
120123266
03400 DNA repair and recombination proteins [BR:
hsyr03400
]
120123266
Enzymes [BR:
hsyr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
120123266
DNA replication proteins [BR:
hsyr03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
120123266
DNA repair and recombination proteins [BR:
hsyr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
120123266
MMR (mismatch excision repair)
DNA polymerase delta complex
120123266
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
Motif
Other DBs
NCBI-GeneID:
120123266
NCBI-ProteinID:
XP_038998113
LinkDB
All DBs
Position
Unknown
AA seq
1097 aa
AA seq
DB search
MNNGGNPRKRPPPPSSHQPSPATKHQATAPTPPPPSAEEDFVDEDVFLDETLMGAEDVES
LILRDLEEREALASRLSRWARPPLSDAYVSQSRSIVFQQLEIDYVIGESHXRFLPDSSGP
AAIIRIFGVTGEGHSVCCLVHGFEPYFYISCPSGMGPDDISHFHQTLEARMKEKNKNSKV
PKFVRRIELVQKRSIMHYQQQKSQPFLKIVVALPTMVANCRGILDRGIQIDGLGMKSFMT
YESNVLFALRFMIDCNIVGGNWIEIPAGQYKKTMRNMSYSQLEFDCLYSDLISLAPEGEF
SKMAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGEDQPFIRNVMTLKSCSPIV
GVDVMSFDTEKEVFLAWREFIREVDPDIIIGYNICKFDLPYLIERAQTLGIEEFPILGRI
RNSRVRVKDTTFSSRQYGTRESKEVTVEGRVQFDLLQAIQRDYKLSSYSLNSVSAHFLSE
QKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMYVYNYVEMARVTGVPIS
FLLSRGQSIKVLSQLLRKSKQKNLVIPNVKQAGSEQGTYEGATVLEAKAGFYEKPIATLD
FASLYPSIMMAYNLCYCTLVTPEDVRKLNLPPECVNRTPSGETFVKPNLQKGILPEILEE
LLAARKRAKADLKEAKDPLEKAVLDGRQLALKVSANSVYGFTGATVGQLPCLEISSSVTS
YGRQMIEHTKKLVEDKFTVLAGYEHNAVVIYGDTDSVMVQFGVSDVEAAMNLGREAAEHI
SGTFTKPIKLEFEKVYYPYLLISKKRYAGLFWTNPKTYDKMDTKGIETVRRDNCLLVKNL
VNECLHKILIDRDIPGAVQYVKNTISDLLMNRMDLSLLVITKGLTKTGEDYEVKAAHVEL
AERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQIS
KPLLRIFEPILKNASKELLHGSHTRSISISTPSNSGIMKFAKKQLSCIGCKALISDADQT
LCSHCKGREAELYYKTVSQVSDLEELFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKK
AQKDMVEAKRQLDRWDF
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatggaggcaacccaaggaagaggccaccaccgccgtcttcgcaccagccatct
ccggcgacgaaacaccaagcgactgctccgacgcctccgccaccatcggcggaagaggat
ttcgttgatgaagatgtcttccttgacgaaacccttatgggggcagaagacgtggaatcc
ctaattctgcgcgacttagaggaacgtgaagctctcgcttctcgtctttccaggtgggcg
cgccctcctctctccgacgcctacgtgtcccagtctcgtagcattgttttccagcaattg
gagattgattacgtgattggagagagtcatnggaggtttctgcctgattcttctggtcca
gccgccattatcagaattttcggggttactggagaaggacacagtgtttgttgtcttgtt
catggatttgagccgtatttctatattagctgcccatcaggaatgggtcccgatgatatc
tcccattttcatcaaaccctcgaggctaggatgaaggagaagaacaaaaacagcaaagta
ccaaagtttgttcgtcgcattgaattggttcagaaaaggagtattatgcattaccaacaa
caaaagtctcaaccttttctcaagattgtagtggcactgccaactatggttgctaactgc
cgaggcattcttgatagaggcatacaaattgatggacttggtatgaagagtttcatgaca
tatgaaagcaatgttcttttcgcgctgcgtttcatgatagattgcaacatcgttggtggt
aattggattgagataccggctggtcaatataagaagacaatgaggaatatgtcctacagc
caattggagtttgattgcttgtattcagatttgattagccttgctcctgaaggggaattc
tcaaagatggctccatttcgcatattgagttttgatatagagtgtgctggccgaaaaggt
cattttccggagcctactcatgatcctgtaatccagatagcaaatctagttactttgcaa
ggagaagatcagccattcattcgtaatgttatgaccctcaagtcatgctccccaatagtt
ggtgttgatgtgatgtcttttgatacagaaaaagaagtctttcttgcttggagggagttt
attcgtgaagtggaccctgatattataattggatataacatttgcaagtttgatttgccc
tatcttattgagagagcacaaacgttgggaatagaagagtttcccatacttggccgcatc
agaaatagtagggttcgtgtaaaagatacaacattttcgtcaagacagtatggaactaga
gagagcaaagaagttactgtggaggggagagttcagtttgatttgctccaggctattcaa
cgggactacaaactaagttcgtattcattgaattcagtttcagctcactttctttctgaa
cagaaagaggatgttcatcattcaataatatcagatcttcagaacgggaatgctgagact
aggaggcgtcttgccgtttattgtttgaaggatgcataccttccccagaggcttttggat
aaactaatgtatgtttacaattatgttgagatggctcgcgtcacaggtgtgcccatctct
tttcttctttctagaggacaaagtatcaaggtactttctcaacttcttaggaaatctaag
cagaaaaaccttgttattccaaatgtcaaacaggcaggatctgaacagggaacatatgaa
ggtgcaactgtgttggaagcgaaggcaggattctatgaaaagccaattgcaacactggat
tttgcatctttgtatccgtcaattatgatggcatataatttatgctattgcacactggta
actcctgaagatgttcgtaaactcaacctcccaccagaatgtgttaacagaactccatct
ggtgaaacttttgttaaaccaaatctgcagaaggggatacttccagaaattttggaagag
ttgttagctgctcggaaacgagcaaaagctgatttgaaggaagcaaaggatccacttgag
aaagctgttttagatggcagacagctggccttgaaggtgagtgcgaattctgtatatgga
tttacaggagctactgttggtcagttgccatgtttagagatttcttcaagtgttacaagc
tacggtcgacaaatgattgagcataccaagaaacttgttgaagataaatttacagtgcta
gcaggctatgaacacaatgctgtggttatatatggggatacagattcagttatggtacaa
tttggtgtgtctgatgtagaagcagcaatgaacttgggtagagaagctgcagaacacatc
agtggaacctttacaaaacccatcaaactagagttcgagaaggtttattatccctaccta
ttgattagcaagaaaagatatgctggtttgttttggacaaatccaaaaacgtatgacaaa
atggacactaaaggcattgaaactgttcgaagagacaattgtttattggtcaaaaacctt
gtaaatgaatgcctgcacaaaatattgatcgatagagatattcctggtgcagttcagtat
gtcaagaataccatttcagatcttctcatgaaccgaatggatttgtcacttttggttatt
actaagggtctgacaaaaactggagaggattatgaggtaaaagctgctcatgttgaactt
gctgaacgtatgcgcaagcgggatgctgctactgctccaaatgttggggatcgggtgcct
tatgtaattataaaagctgcaaaaggtgccaaggcatatgagaggtcagaggacccaatc
tatgtgctagaaaataacatccccattgatcctcaatattaccttgaaaatcaaattagc
aagccacttctaagaatttttgagcccattttaaagaatgccagcaaggaacttctccat
ggaagtcacacaagatcaatttccatttcaactccgtcaaacagtggaataatgaaattt
gcaaagaaacaacttagttgtattggctgcaaagcgctaattagcgatgcagatcaaaca
ctctgttcacactgcaagggaagagaggcagaactttactataaaacagtttctcaagtg
tcagatctagaggagcttttcgggaggctatggacacagtgccaagagtgtcaaggttct
cttcaccaggatgtgctctgcactagtcgagattgtccaatattttaccggaggaagaaa
gcgcagaaagatatggtagaagccaagcggcagttggaccggtgggacttttaa
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integrated database retrieval system
