KEGG   Hibiscus syriacus (Rose-of-Sharon): 120125113
Entry
120125113         CDS       T09559                                 
Name
(RefSeq) histone deacetylase 6-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
hsyr  Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03082  ATP-dependent chromatin remodeling
hsyr03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:hsyr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    120125113
   03083 Polycomb repressive complex
    120125113
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:hsyr03036]
    120125113
Enzymes [BR:hsyr01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     120125113
Chromosome and associated proteins [BR:hsyr03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     120125113
   HDAC complexes
    Sin3A-HDAC complex
     120125113
    BRAF-HDAC complex
     120125113
    REST complex
     120125113
    SHIP complex
     120125113
    MiDAC complex
     120125113
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     120125113
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    120125113
  Chromatin remodeling factors
   NuRD complex
    120125113
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 120125113
NCBI-ProteinID: XP_038999536
LinkDB
Position
Unknown
AA seq 470 aa
MGDSAGGASLPSGPDGKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHRR
MEINRPFPAGPADIRRFHTEKYVDFLNAVSPDSMSDPTYSRHLKRFNVGEDCPVFDGLFG
FCQASAGGSLGAAFKLNRGDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKFHK
RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDVGVGNGKYYALNVPL
NDGMDDENFRGLFRPVIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFL
RSFNVPLMVLGGGGYTIRNIARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEVG
NIENLNAPRDMEKIRNMLLEQLSRLSHAPSVPFQTTPSTILPPEEAEEDMDERPKPRIWN
GDDYESDPEDDEKPLHRFSSSDVKQHTTDVDMREVSQDLKEEKAEEQSLS
NT seq 1413 nt   +upstreamnt  +downstreamnt
atgggagactccgccggcggcgcctcactaccctcgggaccggacgggaagaagcggcgt
gtaacatacttctacgagccgacgattggtgactactattacggccagggtcacccgatg
aaaccccacaggatccgtatggcacacaacctcatcgtccattattctctccaccgtagg
atggagattaaccgtcctttccccgccggtcccgccgatatacgccgtttccacaccgag
aagtacgtcgacttcctcaacgctgtctcccccgactccatgtccgaccccacttattct
cgccatttgaagcgtttcaatgtcggagaggattgtcccgtgttcgatgggctttttggt
ttctgccaggcctccgccggtggctcccttggcgccgcctttaagttgaatagaggggat
gccgacatcgccatcaattgggctggtggattgcaccatgctaagaaaagtgaggcttct
gggttttgctatgttaatgatatcgtgcttgggattcttgagctactgaagtttcacaag
cgtgtattgtatgtagatattgatgtccatcatggtgatggcgtagaagaggcattttac
accactgacagagttatgaccgtgtctttccataaatttggggatttcttcccagggact
ggacacatcagggatgttggggtggggaacggcaaatactatgctttgaatgttcccttg
aatgatgggatggatgatgagaatttccggggtctgtttcgtcctgtaatccaaaaggtc
atggaagtgtatcagccagatgcagttgttctccaatgtggagcagattcattgtctggt
gacagattgggttgcttcaacttgtctgtgaagggccatgcagattgtcttcgctttctt
agatctttcaatgttcctttaatggtcttgggtgggggagggtatactatccgcaacatt
gcccgatgttggtgctatgagacagcagttgcagttggggttgagcctgataataagctg
ccttataatgaatattatgagtattttggtccagattatacacttcatgttgaagtgggc
aacatagagaacctgaatgcacccagagatatggagaagataaggaacatgctattagag
cagctttccagactgtctcatgcacccagtgttccttttcaaactacaccttcaacaatc
ctaccacctgaggaggcagaggaggacatggatgaaagaccaaaacctcgcatatggaat
ggggatgattatgagtcagaccctgaagatgatgagaaacctctacacagattctccagt
tctgatgttaaacaacatacaacagatgttgatatgagggaggtatcacaagatttgaaa
gaagagaaagcagaagaacagtcgctatcttga

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