Hibiscus syriacus (Rose-of-Sharon): 120126154
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Entry
120126154 CDS
T09559
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120126154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120126154
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120126154
mRNA degradation factors
5'-3' decay
Decapping complex
120126154
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
Beta-prop_TEP1_C
Beta-prop_EML_2
Beta-prop_HPS5
DUF520
Motif
Other DBs
NCBI-GeneID:
120126154
NCBI-ProteinID:
XP_039000357
LinkDB
All DBs
Position
Unknown
AA seq
1405 aa
AA seq
DB search
MASSGNPNLQPQSGGAGESGGGGGIDLNKLFKPSSGPMPQHLQNMNVVATPPIPNTTNLT
TSPSFPAQSSTPPPPPYLMPSSSYPPPTGPYPYHHHYLPYPPPPPHQHPLHPSPNPPQLH
INGPIPFQPQPSAPATSTSGSDVFMAFMGSRSQSQAPATPPSAPPLTLNVNPWPSVPSSP
SPARLLSSKVPKGRHLNGTNLVYDINVRLPSEVHPQLEVTPITKYASDPGLVLGRQIAVN
RNYICYGLKLGNIRILNINTALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRVFVWKI
HEGPDDEDKPQIFGKVIIAIQIVGQEESKHPRVCWHPHKQEILMVAIGNRILKIDTMKVG
KLESFSAEEPLNCSVDKLIDGVQFVGKHDGEITELSMCQWLTTRLASASVDGTVKIWDDR
KPLPLAVLRPHDGLPVSSATFLTAPHRPDHIVLITGGPLNREVKMWSSSSEEGWLLPNDD
ESWQCTQTLELRCSAESEVDNAFFNQVVALPRAGLLLLANAKKNAIYAVHIDYGPYPAAT
RMDYIAEFTVTMPILSLTVTSDNLPGGESVQVYCVQTQAIQQYALELSQCLPPHLEKTDM
DKTDSNTSRSFDGMNSDGSASLELANGYKPTDVTLNSSVPSSSIKSGSPEGAAMPSSSQI
SASAEATSIFESDVFGMESKPSALPTGSSAENLHTASPPLPLTTRLSQESSGFRSPSSAG
HVDRPAHDHSVDHKVDMVKENKIESPYSDDHMQKGEDIAQNDISTVPDPHTVFKHPTHLV
TPSEILSIVSSSAENAQNSQVTNGDETTVEDVVKNDAERIEVDDEVHDERRLGQSNETKC
PQGSHTTFADNKEKAFHSQASDLGIQMARDFCSESYDVEGDQQAKRMGVSVQADRLTNGG
DGGDQNVNEDAPSKVGETDTAVTVSPSPASAKGKKQKKKTSQVSILSSPSVNPYNSTDSS
NEPGCNSGAPSANAISTQLLAMQDMLEQSLSMQKEIQKQMNAIVSAPVNKEGKRLEASLG
RSIEKAVKENTDALWACFQDENARLEKLERDHMQQITNLISNCVNKDLPAVFEKSLKKEI
TAVGSVLARAISPTLEKSISSAITESFQKGVGEKAVNHLEKSVSSKLEVTLARQIQAQFQ
TSGKQALQDALRSSVETYVIPAFEMSCKSMFEQIDVTFKKGLREHTATAHQQFEKSHSSV
AATLQDAINSAASITRTLSGELADGQRKLLAMAAAGANSNAGNPLLSQSSNGPLAHLHEM
QPEANTDPVKELGRMIAEKKYNEAFTAALHRSDVSIVSWLCSQVDLQGILSMKPCPLSQG
VLLALFQQLACDINTETSRKLGWMTDVGVAIIPSDPTIAMHMVPIFSQVSQIVDHLQTTS
SSTSASESATIRLLKFVINSVLSCK
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttccgggaatcccaatctgcaaccccaaagcggcggcgcaggtgaaagcggc
ggcggcggagggatcgatttgaataaacttttcaaacccagttcaggccctatgccgcag
catcttcaaaacatgaacgtagtagcaactcctccaattcccaacactaccaaccttact
acatctccttctttcccggcccaatcctccacgccgcctccgccgccttacttgatgcct
tcatcctcttatcctccgcctactgggccgtacccttaccaccaccactaccttccttat
cctcctcctcctccccatcaacaccccttgcatcctagtccaaacccaccacagcttcat
attaatggacccattccttttcaaccccaaccctcagcacccgccacttctacttcagga
agcgacgtttttatggcgtttatgggttctcgatcccagtcacaagctcctgcaactccc
ccttctgccccacctcttactttgaatgtcaacccatggccatctgttccttcgtctccc
tcgcctgcccgactgttgagtagcaaggtccccaagggaaggcatctaaatggaaccaat
ctcgtttatgatattaatgtgaggttgcccagtgaagtacatccccaacttgaggtcact
cccattaccaagtatgcttctgatcccggccttgttcttggtcgtcagattgctgttaat
aggaattacatttgctatggtctcaagcttgggaatatccgtatcctcaacatcaacacc
gccctccgatccttgcttcgtggccacactcagagagtaactgatatggctttttttgcc
gaggatgtccaccttttggccagtgcaagtgttgatggccgggtttttgtatggaagatc
catgaaggccctgatgatgaagataagccgcaaatttttggcaaggttattattgccatt
caaattgtggggcaagaagagtcgaagcatccacgagtctgttggcatcctcacaaacaa
gagatcttgatggttgctattggaaatcgtatcctgaaaattgatacaatgaaagttgga
aaactcgaaagtttttcagctgaggaacctcttaattgctctgttgataagcttattgat
ggagttcagtttgttggtaaacatgatggtgagattacggagttgtcaatgtgccaatgg
ttgaccacccgtttagcttcagcttctgtagatggcacggtgaaaatttgggatgaccgt
aagcccttaccacttgcagtgttgagaccacatgatggacttcctgttagctcagcaaca
ttcttgactgctccacaccgccctgatcatattgttcttatcacaggaggcccactaaac
cgtgaagtgaaaatgtggtcctcttcaagtgaagaaggctggttgttgcccaatgatgat
gaatcatggcagtgtacccagacactggaattgaggtgttctgctgagtctgaggttgac
aatgcattctttaaccaagttgtggcactgccccgtgcaggcctacttctgcttgcaaat
gcgaagaagaatgctatatatgccgtacacatagactatgggccttatccagcagctacc
cgcatggattacatagctgaattcactgtcacgatgcctatattgagtctcactgtaaca
agtgataatttgccaggtggagaatctgtccaagtctactgcgttcaaacacaggctatt
cagcaatatgctttggaattgtctcaatgcctgcctccacacctggaaaagacagacatg
gataaaacagattccaatacttctcgcagttttgatggcatgaactctgatggttctgct
tctctggaattagctaatggatataaaccaactgacgtgactctaaattcctcagttccg
tcgtcatctataaaatcaggtagccctgaaggtgctgccatgccgagcagttcacaaata
tcagcttctgcagaggcgacttccattttcgagagtgatgtgtttggaatggaaagtaag
ccaagtgctttgccgactggtagtagtgctgaaaatttgcacactgcatcacctccactt
ccgttaacaacaaggttatcacaagagtcttctggttttagaagtccatcgagtgctggt
catgttgaccgtcctgcacatgatcattctgttgaccacaaagtggatatggtcaaagag
aataagattgaaagcccctactcagatgatcacatgcagaaaggtgaagatattgctcaa
aacgacatttcaactgttcctgatcctcatacggtgttcaaacatccaacccatctggtt
acaccttcggagatattgtctattgtgtcttcatcagcagagaatgcacagaatagtcag
gttactaatggggatgagacaacagttgaagatgtggtcaagaatgatgctgaaaggata
gaggtagatgatgaagttcatgatgagagaagacttggtcaaagtaatgaaacaaaatgt
ccacagggctctcatactacttttgcagataacaaagaaaaggcattccactctcaggca
tcagatcttggcattcagatggccagagatttttgttcagaaagttatgatgttgaggga
gatcaacaagctaaacgcatgggtgtttcagttcaagcagatagacttactaatggtggt
gatgggggtgaccaaaatgtaaatgaagatgccccttcaaaggttggtgaaacagacacc
gctgtgactgtttccccatctcctgcttctgctaaagggaaaaagcagaagaagaaaact
tctcaagtatctatcctctcttccccttcagtgaacccttataattccacagattcatct
aatgaacctgggtgcaattccggggctccgtcagctaatgctatttccactcagttgctg
gccatgcaggatatgcttgaacagtcccttagtatgcagaaggaaatacagaagcagatg
aatgcaattgtttctgctccagttaacaaagaagggaaaagactggaagcatccctgggc
aggagcattgagaaagctgtaaaggaaaatacagatgccttatgggcttgtttccaagat
gaaaatgcaagactagagaagttagaaagagaccacatgcagcagataacaaatttgatc
tccaactgtgttaataaggacttgccagccgtgttcgagaaatccttaaagaaggaaata
actgcagttggttctgttctggctcgggctattagtcccacgttggagaaaagtatatct
tctgccattacagagtcattccagaaaggagttggagagaaggcagtgaatcatttggag
aagtcagtcagttcaaaacttgaagtgacattggccaggcaaatccaagcacaatttcaa
acttctggaaagcaagctcttcaggatgcactaaggtctagcgtggaaacttatgttatt
ccagcatttgagatgtcatgcaaatccatgtttgagcaaattgatgtaacatttaagaaa
gggctaagagaacacacagctactgctcatcagcaatttgaaaaatcacattcgtccgtt
gctgctactctacaggatgctattaattctgcagcttcaatcactcgaactttaagtgga
gaattggcagatgggcaacgaaaacttctagctatggcagctgcaggtgccaactctaat
gcaggaaatcccttgctgtcacaatcaagtaatggaccgttggctcatctgcatgagatg
cagccagaggcaaatacggatccagtgaaagagttgggaagaatgatagctgagaagaaa
tacaatgaagcattcaccgcagcgctgcatagaagtgatgtgtccatagtttcgtggttg
tgttctcaggttgatctgcaagggatactgtcgatgaaaccatgcccactgagccaagga
gtattgctagcactgttccagcaactggcttgtgatataaatacagaaacaagtagaaag
ctgggatggatgactgatgtaggagtggccataatcccatcagatccaacaatagccatg
catatggtgcccatctttagtcaggtgtcccagattgtggatcatcttcaaaccacgtct
tcttctacatctgcatctgaatccgccaccatccgcctccttaagtttgtcatcaacagt
gtgttgagctgtaaatga
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integrated database retrieval system
