Hibiscus syriacus (Rose-of-Sharon): 120126356
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Entry
120126356 CDS
T09559
Name
(RefSeq) NPC intracellular cholesterol transporter 1-like
KO
K12385
Niemann-Pick C1 protein
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
120126356
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
120126356
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hsyr02000
]
120126356
Transporters [BR:
hsyr02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
120126356
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NPC1_N
Sterol-sensing
NPC1_MLD
Patched
MMPL
Motif
Other DBs
NCBI-GeneID:
120126356
NCBI-ProteinID:
XP_039000502
LinkDB
All DBs
Position
Unknown
AA seq
1291 aa
AA seq
DB search
MDSFRRRSALPSGFISFISLFLLLFIIQAAVSQPNNDELRERHAEGYCAMYDICGARSDG
KVVNCASGSPAVKPDELLSSKIQSLCPAITGNVCCTEAQFDTLRSQVQQAIPFLVGCPAC
LRNFLNLFCELSCSPNQSLFINVTSVSQVRNNLTVDGIDYYITDDFGEGLYESCKDVKFG
TMNTRAMEFIGAGAKNFKEWFAFIGKRAPNNLPGSPYAIQFLPTVTESSGMKPMNVSTYS
CGDVSLGCSCGDCTSSPLCSNTAISTSNEGAKCSVQIGSLKAKCVDLALAILYVVLVSVF
FGWGFFHQTRKRSRSFRMKSFLDTTDDGQSDSLNGQKAENLPMQRLEDSNQRSTVVRLSV
VQGYMSNFYRKYGLWVARHPILVLSLSVGMVLLLCLGLVRFKVETRPEKLWVGPGSKAAE
EKRFFDSNLSPFYRIEQLILATIPDPLDGKSPSIMTEENIKLLFEIQKKVDGIRGNYSGS
MISLTDICMKPMGEDCATQSVIQYFKMDPSYDADDRLDHVNYCFQHYTSAESCMSAFKAP
VDPSTVLGGFSGSNYTEASAFIVTYPVNNALDKEGNATQKAVAWEKAFVQLAKDELLPMV
QSKNLTFSFSSESSIEEELKRESTADAITILISYLVMFAYISLTLGDTPQLSSFYISSKV
LLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQPL
DLPLEGRISNALVEVGPSITLASLSEVFVFAVGSFIPMPACRVFSMFAALAVLLDFLLQV
TAFVSLIVFDFLRAEGRRVDCFPCIKASSTYAESEKGIGGRKPGLLARYMKVVHAPILSL
WGVKILVVSVFVAFSLASIALSTRIEPGLEQKIVLPQDSYLQGYFNNVSEYLRIGPPLYF
VVKNYNYSSESIDTNKLCSISQCNSDSLLNEIARASLASESSYIAKPAASWLDDFLVWVS
PEAFGCCRKFTNGSYCPPDDQPPCCSANDSTCGLSEVCKDCTTCFRHSDLHNDRPSTSQF
REKLPWFLDALPSADCSKGGHGAYTSSVELQGYENGIIKASSFRTYHTPLNKQIDYVNSM
RASRQFASRVSDSLKMEIFPYSVFYMFFEQYLDIWKTALINLAIAIGAVFIVCLVITCSL
WTSAIIMLVLAMILVDLMGVMAILGIQLNAVSVVNLVMSVGIAVEFCVHITHAFSVSSGN
RDERVKEALGTMGASVFSGITLTKLVGVLVLCFSKTEVFVVYYFQMYLALVLLGFLHGLV
FLPVVLSMFGPPSRCIKIEKQDERPSVSSQP
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atggactcctttcgccggagatcagcgcttccttctggatttatttcattcatttccttg
tttctgcttttatttattatacaagcggcagtttcgcagccgaacaatgatgaactaagg
gagagacatgctgaaggatattgtgcaatgtatgacatttgcggagcacgaagtgatggc
aaagtagtgaactgtgcttccggttctccagcagtaaagcctgatgagttactttcgtcc
aagattcaaagtttgtgcccagcaatcactggaaatgtttgttgtacagaagctcaattt
gatacactacggagtcaagtccagcaagcaattcctttccttgtaggctgtccagcatgc
ttgagaaactttttgaatctgttctgtgagctctcatgttctccaaatcaaagtttgttc
atcaatgtaacttctgtatcccaggtcagaaataatttgaccgtggatggaattgactat
tacataactgatgattttggtgagggcttgtatgaatcttgcaaggacgtaaagtttggt
accatgaatactcgtgctatggaatttattggtgctggtgctaaaaatttcaaagagtgg
tttgctttcattggtaagcgagcaccgaataacttgccaggttcaccatatgccattcag
ttcctgccaactgttaccgaatcatctgggatgaaacctatgaacgtatccacttattca
tgtggagatgtttcactgggatgttcttgtggtgattgcacttcatctcctctctgttct
aatacagctatatctacttccaatgagggggctaaatgttcagttcaaattggatctctt
aaggccaaatgtgtcgatttagctttagcaatcctctatgttgtattggtttctgtgttt
ttcggatggggctttttccatcagacaagaaaaagaagccggtcttttcgaatgaaatca
tttttggatacaacagatgatggccaatctgattctcttaatgggcaaaaagctgagaac
ctccccatgcagaggctagaagattctaatcaacgtagcactgtggttcgtctttctgtt
gtgcaaggatacatgtcaaacttttacaggaaatatggactatgggttgctagacatcct
atccttgtattgagtttgtcagtgggaatggttcttctactttgcttgggcctagtccgt
ttcaaggtggaaacacgaccagagaagctatgggtaggacctgggagtaaagctgcagaa
gagaaacggttttttgacagcaacctatctcctttttacagaattgagcagctaatacta
gcaacaattccagaccctttggatggtaaatcgcccagcattatgaccgaggaaaacatt
aagttgttgtttgaaattcagaagaaggttgatggaatccggggaaattattctggctca
atgatatctttgacagatatttgcatgaagccgatgggtgaggattgtgccacgcaaagt
gttatacagtatttcaaaatggatccaagttatgatgctgatgaccgactggatcatgtc
aactattgttttcagcattatacatctgcagaatcatgtatgagtgcttttaaagcacca
gtagatcctagcaccgtattaggaggtttctctgggagcaactatactgaggcttctgca
tttatagtaacttatccggtaaacaatgctcttgacaaagaagggaatgcaactcaaaag
gcagtggcttgggagaaggcctttgttcagttagcaaaggatgagttgttgcctatggtt
caatctaaaaatttgacattttcgttttcttcggaaagctctatcgaggaggagttgaaa
agagaaagcactgcagatgccataaccatactgataagctatcttgtgatgtttgcttac
atatctctgaccttgggtgatacgcctcaattatcttccttttacatttcatctaaggtg
ttgcttggcctttctggcgttgtgcttgtcatgctctcggttcttggatcagtaggattt
tttagtgctattggagtaaaatctaccctaatcataatggaagttatcccttttcttgtt
cttgcagttggagtggacaatatgtgcatactggtgcatgctgttaagcggcaacctttg
gacttacctctagaaggaaggataagcaatgcacttgtggaagtggggccatcgataaca
cttgccagtctatctgaggtttttgtttttgcagttggaagtttcatccctatgccagcg
tgtcgagtattttccatgtttgcagcactggccgttttgttggacttccttctgcaggtc
accgcttttgtttctctgatagtgttcgactttttgcgagccgagggtagaagggttgat
tgttttccatgtataaaagcatcatcgacatatgctgaatccgagaaaggcattggtggg
agaaaacctgggctactggctcggtatatgaaggtggtacatgctcccattctcagtctt
tggggagtgaaaattttagtggtttctgtttttgttgccttttcattggctagcatcgca
ttgtccacacgaatcgagcctggtttggaacaaaagattgttcttccccaagactcatat
cttcagggctatttcaataatgtttcagagtatctcagaattgggccgccactctatttt
gtcgtgaagaactataattatagttcagaatcaatagatacgaataaattgtgctccatc
agccaatgtaactcagactctcttttaaatgagatagctagagcatccttggcatcagaa
tcaagctatattgctaagccagctgcttcatggcttgatgattttcttgtatgggtatct
ccggaagcatttggttgctgtcggaaatttactaacgggagttattgtccccctgatgat
cagcctccttgttgctctgccaatgactctacttgtgggttgagtgaagtgtgcaaagat
tgcaccacgtgcttccgtcactcagatttacataatgatcgcccctctacgtcccagttt
agggagaaacttccatggttccttgatgctttaccttctgctgattgttcaaaaggtgga
catggtgcttacactagcagtgtggaactccaaggctatgaaaatggtatcatcaaggca
tcatcattccgcacctaccatacacccctcaataagcagattgattatgttaactcaatg
agggcatctcgacaatttgcttcaagagtttcagattctttaaagatggaaatcttccca
tattccgtgttttatatgttctttgagcaataccttgatatatggaagacagctctcatc
aaccttgcaattgcaattggtgcggtatttattgtttgtttagttattacatgcagtttg
tggacctcagctatcatcatgctggtgttggcaatgattctcgttgatctcatgggtgtg
atggccattctcggaattcaactcaatgccgtctctgttgttaatcttgttatgtcggtt
ggcattgctgttgagttctgcgtgcatataacgcatgcattttcggtaagcagcgggaat
agagatgaaagggtaaaggaagctctgggtacgatgggagcttccgtcttcagtggaatc
actttgacgaagctagtaggggtgctggttctttgcttctcaaagacggaagtttttgtg
gtctattacttccagatgtaccttgcgttggtccttctaggtttcttacatgggcttgta
tttttgccggtggtgctgagcatgtttggtccaccgtcgagatgtataaaaatcgagaaa
caagacgagcggccttcggtttcatcgcagccttaa
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integrated database retrieval system
