Hibiscus syriacus (Rose-of-Sharon): 120127027
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Entry
120127027 CDS
T09559
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A isoform X1
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120127027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120127027
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
120127027
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
OB_HELZ2
CSD2
OB_RNB
PIN_6
Toxin_R_bind_C
Motif
Other DBs
NCBI-GeneID:
120127027
NCBI-ProteinID:
XP_039000968
LinkDB
All DBs
Position
Unknown
AA seq
939 aa
AA seq
DB search
MLKSNTFSRKTKGGRIKKEVREIYLRDDIYCGAAVCKTCDTSTSRAPLDSACPLLVLDTN
VLLQQIDLLENPAINNVVLLSVVLDEVKNKNTAVYNRIRALSTNPSRKFYVFSNQFHKDT
FVKRMDGETPNDYNDRAIRVATRWYQTHLGTATTVLLITNDRENKRRATEEGISADTIQS
YVKSLGQPELLDLLVHPAPESEDIVMDEVEDLRPSKRQVVYQEHKPMSEITLGLHRGIYH
QGKLRVNRYNPFEAYVGSESIGDEIIIHGRQNMNRAFDGDIVAVELLPQDQWHEEKNLSI
ADEEDKEEDVHLAPSSADDAPRTTNLVSGSATDMNSTPSRPSGRVVGIIKRNWHSYCGSL
EPMPLPAGTGSLISALFVSKDCRIPKIRIQTRQLENLLDKRIIVAVDSWDRQSRYPSGHY
VRVIGEIGDRDTESEVVLIENDINSRPFSSQVLACLPPLPWSVSSEDVTNSIRLDLRSLR
VFSVDPPGCKDIDDALHCTALPNGNYEVGVHIADVTNFVHPGTPLDDEASQRGTSVYLVE
RRIDMLPKPLTEDICSLRADVERLAFSVIWEMSPDAEIISTRFTKSVIKSCAALSYVEAQ
ARMDDSRLMDPLTTDLRNMNSLAKIMRQRRIDKGALTLASAEVKFQIDTETHDPLDIGMY
QIREANQMVEEFMLAANVSVAKQIRECFPSCSLLRRHPTPTREMLEPLLCTAAAVGLDLD
VSSSKALADSLDHAVRDDPYFNKLIRILATRCMTQAVYFCSGDLSPPEYHHYGLAAPMYT
HFTSPIRRYADVIVHRLLAASLGIDKLPPVFQDRAQLTSIADNLNYRHRNAQMASRASVE
LHTLIYFRNRPTDTEARIVKIRSNGFIVFVPKYGIEGPVYLTTRAEKGSGEWRVDEQQQK
IIKMDNNSLSYSVLQAVRIHMEVVEPQPNRPKLQLTLIT
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagagcaacacgttcagcaggaagaccaagggtggcagaattaagaaggaagtt
agagaaatatatctgagagacgacatttactgtggagctgctgtctgcaaaacatgcgac
acttccacttcacgtgctcctttggattctgcttgtccccttctcgttctcgatactaat
gtccttcttcaacagatcgacttgctcgagaaccctgccatcaacaacgttgtactgcta
tccgtggtgctggatgaggttaagaacaagaacacggccgtttacaatagaattagagct
ctctccaccaatcctagccgcaagttctatgttttcagtaatcagttccataaagacaca
tttgtaaagcgcatggatggtgaaaccccaaatgattacaatgacagagcaattcgggtg
gctactcgatggtatcaaactcatcttggtactgcaacaacagttttacttataaccaat
gacagagaaaataagaggagggccaccgaagagggcatttctgctgacacaattcagtcc
tatgtaaaatcattgggccaaccggagttacttgatctgcttgttcaccctgcacctgaa
tccgaagatattgtcatggatgaagttgaagatttgagaccttccaagagacaagttgtt
tatcaagagcataaacccatgtctgagattactttgggtttgcatcgtggaatataccat
caaggaaagcttcgggttaatcgttacaatccatttgaagcttatgttggaagtgagagc
ataggtgatgaaataattatacatggacgtcaaaacatgaatagagcttttgatggtgat
atagtagctgtagaacttctgccccaagatcagtggcatgaggagaagaacttatccatt
gcagatgaagaggataaggaagaagatgttcatttagctccaagcagtgctgatgatgcc
cctagaactacgaatctggtatcaggttctgccactgacatgaactccactccatcgcgt
ccatcaggccgtgttgttggtattataaagcggaactggcattcttattgtgggtctttg
gagccgatgcctcttcctgctggtacaggaagccttatatctgccctgtttgtctccaaa
gattgtagaattcctaagattcggattcaaacccgacagcttgagaatcttttggataag
aggataatagtggcagttgattcttgggaccgtcaatctcggtatccttctggtcactat
gtacgagtcattggagaaataggtgatagagacactgagagtgaggtggtcttaattgag
aatgatataaactcaaggcccttttcttcccaagttttggcttgcttgccaccattacca
tggtctgtgtctagtgaagatgtgacaaattcaatccggctggatttgcgatctttgcgt
gtctttagtgtagatccccctggctgtaaggacattgatgatgcattacactgtacagct
cttccgaatggaaactatgaagttggagtccacattgctgatgtaacaaattttgttcac
cctggcactcctctggatgatgaagcttcccagagaggcacatctgtctaccttgttgag
cgccggattgacatgcttcctaaacctttgacagaagatatatgttcacttagagctgat
gtagaaaggctagctttctcggttatttgggaaatgtcacctgatgcagagattatctca
actagattcacgaaaagtgttatcaaatcatgtgctgcattgtcttatgttgaagcgcaa
gctaggatggatgatagtcgattgatggacccattaactacagatttgagaaatatgaac
tctttggctaagataatgaggcagagacgcattgataaaggagccttaactcttgcttcc
gctgaagtcaaatttcaaattgatactgagactcacgatcctcttgatattggcatgtat
cagattcgagaagcaaatcaaatggttgaagaatttatgcttgctgctaatgtttcagtt
gccaaacaaatccgtgaatgttttccttcctgctcgctgctaaggcgtcatccaactcct
acaagggagatgcttgaacctttattgtgcactgctgctgctgttggacttgacttggat
gtttcttcatcaaaagcattggccgactcccttgatcatgctgtgcgtgatgatccttac
tttaataagttgattcggatactggcaactaggtgtatgacacaggctgtttatttctgt
agtggggatctcagccctccagaatatcatcattatgggcttgcagctcccatgtatact
catttcacttctcctattaggagatacgcagacgtaattgtgcacaggttgcttgctgca
tccctagggattgataagcttccaccggttttccaagacagagctcaactaactagtatt
gctgataatctgaattatcgacataggaatgcccaaatggcaagcagggcctcagtggag
ctccatactctcatttactttagaaaccggcccaccgacacagaagccaggatagtgaag
ataaggtccaacgggttcatcgtttttgtgcccaaatatggtatagaaggaccggtgtac
ttgacaacaagggcagagaagggaagcggggagtggcgtgttgacgagcagcagcagaag
attataaagatggacaacaatagcctttcctacagtgtactgcaagcagtgaggatccat
atggaggttgtcgaaccccaaccgaaccgccctaaactgcagcttactcttattacctag
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