Hibiscus syriacus (Rose-of-Sharon): 120127404
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Entry
120127404 CDS
T09559
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120127404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsyr04131
]
120127404
Membrane trafficking [BR:
hsyr04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
120127404
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_Vps41
VPS8_N
Clathrin
TPR_VPS8_2
Beta-prop_EML
zf_RING_Vps8
WD40
ANAPC4_WD40
Beta-prop_EML_2
WDR55
zf-RING_Vps41
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_HPS5
WD40_Prp19
Beta-prop_TEP1_2nd
Motif
Other DBs
NCBI-GeneID:
120127404
NCBI-ProteinID:
XP_039001248
LinkDB
All DBs
Position
Unknown
AA seq
1620 aa
AA seq
DB search
MPSHEDDEEHVSGDDDASSISDISELVEEKLEQLESERXSKRAENSSSATKKPLELAEEL
EKKQASTGLHLEEGAVAQPMRLEGVKRGSXTLGYFDVESNNTITRTLSSQAFRRDHGSPQ
VLAVHLNFIAVGMTKGVIILVHSKYSTHHADSIDPKMVILGLQGDRSLAPVTSMCFNQPG
DLLLAGYGDGHVTVWDVQRASATKVITGEHNAPVIHTLFLGQDSQVTRQFKAVTGDSKGL
VLLHAFSAVPLLNRFSIKTQCLLDGQRTGTVLSASPLLFDDSCGSTLVTSQGNTTSTTSI
GSKMGGVVGGDAGWKLFTEGSSLAEEGVVIFVTYQTALVVRLTPTVEVYAQLSRPDGVRE
GSMPYTAWSCMAQPSSSSAENAPTETPERISLLALAWDRRVQVAKLVKSDLKXYGSWSLD
SSAIGLAWLDDQMMVVLTMTGKLNMFARDGTLIHQTSFDIDGLGGDDLITYHTHFINIFG
NPEKAYHNCASVRGASVYVLGPTHLTVCRLLPWKERIQVLQKAGDWMGALNMAMTLYDGQ
AHGVIDLPRNLDAVQETVMPYFVELLFSYVDEVFSYISVAFGNQFGKLEQPNDQESRKGS
VHSEIKEQFTRVGGVAVEFCAHIRRTDILFDEIFSKFVAVQQRDTFLELLEPYILKDMLG
CLPPEIMQALVEHYSSKGWLQRVEQCVLHMDISSLDFNQVVILCREHGLYGALVYLFNKG
LDDFQAPLEELLVVLRNSQRGSASGLGYRMLVYLKYSFMGLAFPPGQGTLPPSRVLSLRT
ELLQFLLEVSDGQDKNPASTLAFEGAFLNLYYLLELDTEATLDVLKCALIEEKSPELDSS
FSESGDAIVEAKKEKDLMAESETMLVQKTIDALVHVLDKNAPRTDGSASNGDTKSIEAWP
SAKDMGYLFEFIACYVACGRAKIPKNVLNQILEYLTSENNSSSSVSTMSTKNSKRREKQL
LSLLEVVPETDWDQSCVLQLCENACFYQVCGLIHTIRHQYLAALDSYMKDVEEPIHAFAF
INNKLMQLSNGDYSTFRSAFVSRIPELVNLSREDTFLLVVGHFNDESSRILSELKSHPKS
LFLYLKTVIEVHLSGTLNFSYSREEKIVEVFSGKGGKDSEKVLEAYFEGMSNFPKFLRNN
PPHVTDDMIELYLELLCQFERDSVLKFLETFDSYRVEYCLRLCQEHGIIDAAAFLLERVG
DVGSALLLTLSSLNDKFAELDNAIGSMVSKVSLGTSGSMEYFNSVLKMKEVNDIRTLLQA
CIELCQRNTPRLNPEESEMLWFRLLDSFCEPLMGSYCNERAPEKENHVGLVESLGSQDEE
ECITKWRIPKSHKGRHILRKLLSQFIKEIVEGMIGYVRLPTIMSKLLSDNGGQEFGDFKL
TILGMLGTYGFERRILDTAKSMIEDDTFYNLSLLKKGASHGYAPRSLLCCICNSLLTKNS
SSFRVRVFSCGHATHLQCELLENEASTRGLSSGCPVCLPKKNTQKSRNKSALTENGLVSS
FPSRHLPAQGSTLHPHENDALDNSHGLQQISRFEILTNLQKDQRLAQIENLPQLRLAPPA
IYHEKVKKGSGALAGESSSQVGAIQKPSKNMQLKELKLKGSSLRFPLKSSIFGKEKTSKS
NT seq
4863 nt
NT seq
+upstream
nt +downstream
nt
atgcccagtcatgaagatgatgaggagcatgttagtggtgatgatgatgcaagttcaatt
agtgacatttcagagcttgtagaggagaaattggagcagctggagagtgagaggntaagt
aaaagggcagaaaacagttcaagtgctacaaagaagccacttgaacttgctgaggagctt
gagaagaaacaggcttctactggtttacatttggaggagggtgcagttgctcaaccaatg
cggcttgaaggtgttaagaggggttcangcacattgggatactttgatgttgaatctaac
aatacaatcactcggactctttcatcacaggcatttaggcgtgatcatggctcccctcaa
gttttggcagttcatctgaactttattgccgtgggaatgactaaaggggtcatcatccta
gtgcacagcaaatactccactcatcatgctgacagcattgatcctaagatggtgatactt
ggtttacaaggggatcgatcccttgcccctgtaacatccatgtgcttcaatcagccagga
gaccttctcttagctggttatggtgatggtcatgtcacagtttgggatgttcagagggca
tcagcaacgaaagttattactggagaacataatgctccagtgatacatacattatttctg
gggcaggattctcaagttactcgccagtttaaagctgttacaggtgatagtaaaggcttg
gttctgttacatgctttctcagctgttcccttgcttaataggttctcaatcaaaacacag
tgtcttcttgatggacaaagaacgggcactgtattgtcagcttcccctcttctttttgat
gattcttgtgggagcactttggtgacctctcaagggaatactacttctactaccagtatt
ggtagcaagatgggaggtgtagttgggggagatgcaggttggaaactcttcactgaaggc
tcttctctggctgaagaaggtgtggtcatatttgtcacctatcaaactgctctggtggta
aggcttactccaacagtagaagtttatgcacagctttctaggccagatggtgtgcgggag
ggttccatgccatatactgcatggtcttgtatggcgcagcctagtagttcttcagcagaa
aatgcaccaacagaaacgccagaaagaatttcgcttcttgcacttgcatgggatcggaga
gttcaggttgcaaagttggttaaatcagacctaaagntatatggtagctggtctcttgac
agttcagccattggtttggcttggttggatgatcagatgatggtggttcttacaatgacg
gggaaactcaacatgtttgctagggatggaaccctgattcaccaaacaagttttgacata
gatggcttgggaggagatgatctcattacatatcatactcacttcattaatatctttgga
aaccctgaaaaagcttatcataattgtgcatctgtaagaggagcatctgtatatgtccta
ggacctacgcatcttacagtatgccgactccttccatggaaggaacgaattcaggttcta
cagaaagccggtgactggatgggagctttgaacatggcaatgacactttatgatggtcaa
gcccatggtgttattgaccttcctagaaacctggatgctgtgcaggagaccgtaatgccc
tattttgtagagttacttttttcatatgtagatgaagtgttttcttatatttcagtggca
tttggtaatcaatttggtaaactggagcagccaaatgaccaggaaagtagaaagggttct
gtgcattcagaaataaaagagcaattcacccgtgttggtggtgttgctgttgaattttgt
gcacatatcaggaggacagacattctttttgatgaaattttctccaaattcgtggctgtt
cagcaaagagatacatttttagagcttttggagccatacatattgaaggacatgcttgga
tgtttgcctcctgagataatgcaagcactggttgagcattacagcagcaaaggatggttg
cagcgagttgaacagtgtgttctccacatggacatttcgtccttggacttcaatcaggtt
gtcattttatgccgggagcatggtttgtatggtgctctggtgtatctattcaacaaagga
ttggatgatttccaggcacctttagaggagttgttagtagttttacgaaatagtcaaaga
ggaagtgcttctggcctcgggtacaggatgcttgtttacttgaagtacagctttatgggt
cttgcttttcctccgggtcaaggtactcttccaccatcgcgcgtgttgtctttgaggaca
gaacttctgcagtttttgctagaggtctctgatggtcaggataaaaacccagcttcaaca
ttggcttttgaaggggcattccttaatctgtattatctcttagagttagatactgaggcc
acattagatgttctaaaatgtgctctcatagaagagaaatcccctgaattggactcctct
ttttctgaatctggagatgcaattgtggaagctaaaaaggagaaagatttgatggctgaa
tctgaaacgatgttggttcagaaaaccatcgatgctcttgttcatgttcttgataagaat
gcccctagaacagatggatctgcaagcaatggtgacactaaatctattgaagcatggcct
tcagcaaaggacatgggatatctgtttgagtttattgcatgctatgttgcatgtggaaga
gctaaaatcccaaaaaatgttctaaatcagattttggaatacttgacttcagaaaataat
agttcgtcaagtgtttctaccatgagtactaaaaactccaaaagaagagagaagcaatta
ctatcacttttggaggtagtgccagaaactgattgggatcagtcatgtgtgttacaatta
tgtgagaatgcatgcttttaccaggtttgtggcttaattcataccatcaggcatcagtat
cttgctgctcttgatagctatatgaaagatgtggaagagccaattcatgccttcgctttt
atcaacaataagttaatgcaactgagcaatggagattattctactttcagatcggcattc
gtctctcgaattccagagcttgttaatttaagcagagaggacacattcttgttagttgtt
ggccattttaatgatgaaagttcacgtatcctgtctgaacttaagtctcatccaaaaagc
cttttcctttacttaaagacagtcattgaggttcacttatcaggcaccctcaacttctct
tattcaagggaagagaagattgtagaagtcttcagtggaaaaggagggaaagattcagaa
aaagtccttgaagcctacttcgaaggaatgtctaatttccctaagttcctgcgaaataat
cctcctcatgtaactgatgatatgattgagctgtatctggagttattatgtcagtttgaa
cgggattcggttctcaagttcttggaaacttttgatagctatcgagttgaatactgtctc
cgcctgtgccaggaacatggaatcatagatgcagctgcatttttattagaaagggttggt
gatgtcggtagcgctcttttgcttacactttctagccttaatgataaatttgcagagctt
gataatgccatcggaagtatggtctctaaggtgtctttaggaacatctggtagcatggag
tatttcaactctgttttgaaaatgaaggaggtgaatgacatacgaactttgttgcaagct
tgtattgaattgtgccaacgtaataccccccgtttgaacccagaagagtctgagatgctt
tggtttagattgcttgactcattttgtgaacctttgatgggttcatactgcaatgaaagg
gcacccgagaaggaaaatcatgtgggtctggttgaatcattgggttctcaagacgaagag
gaatgcataaccaagtggaggatcccaaaatctcacaaaggtcgtcatatattgaggaaa
ctgttatctcagttcatcaaagagattgttgagggtatgataggatacgttcgtcttcca
acaattatgtcaaaactcctatctgataatggtgggcaggaatttggagatttcaagctt
accatattgggaatgctgggaacttatggctttgaaagaagaattctggatactgccaaa
tctatgatcgaggatgacacattttacaacttgagcctactgaagaagggagcttctcat
ggatatgccccgcgaagtctactatgttgtatatgcaacagccttcttaccaagaattct
tctagctttcgtgttcgggtcttcagttgtggtcacgcaactcatcttcaatgtgagctt
ctggaaaatgaggcatcaactaggggcttgtcatccggatgccctgtttgtttgccaaag
aagaatactcagaaatctagaaacaaatctgctcttacagagaatggtttagttagctca
tttccctcaagacacctcccagcacaaggatcaacattgcatcctcacgaaaacgatgct
ctagataattctcatggccttcagcaaatatcacggttcgaaattctaactaaccttcaa
aaagaccagagattagcccagatagaaaatctgcctcagttgaggcttgcaccccctgca
atttatcatgaaaaggtgaagaaaggaagtggagctttagcaggggaaagcagcagtcaa
gttggggcaatccaaaaacctagtaaaaacatgcaactcaaggagttaaagctgaaggga
tcatctctcagattccccctaaaatcaagtatatttggtaaggagaaaacaagcaaatca
tag
DBGET
integrated database retrieval system
