Hibiscus syriacus (Rose-of-Sharon): 120128356
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Entry
120128356 CDS
T09559
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair protein RAD50-like
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03440
Homologous recombination
hsyr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120128356
03450 Non-homologous end-joining
120128356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hsyr03032
]
120128356
03400 DNA repair and recombination proteins [BR:
hsyr03400
]
120128356
DNA replication proteins [BR:
hsyr03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
120128356
DNA repair and recombination proteins [BR:
hsyr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
120128356
BRCA1-C complex
120128356
NHEJ (non-homologous end-joining)
MRX complex
120128356
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
AAA_15
RVT_3
AAA_21
SMC_N
Rad50_zn_hook
SbcC_Walker_B
FapA
AAA_29
ABC_tran
zf-RVT
AAA_16
Motif
Other DBs
NCBI-GeneID:
120128356
NCBI-ProteinID:
XP_039001974
LinkDB
All DBs
Position
Unknown
AA seq
1724 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPKXKNVITFFKPLTLIVGHNGAGKTTIIECLKLSCTGELPPNAR
SGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTLKASKMEYKAIESVLQTL
NSHTGEKECLSYRCADMDREIPALMSVSKAILENVIFVHQDEANWALQDPSTLKKKFDDI
FSATRYTKALEVXKKLHKDQAQEIKAYKLKLEHLQTLKDAAYKLRESISQNQEKTESLKS
QMQVLEKIIDDLDAKIHNAELTLKDLRKLEDQKSTKTAERSTLFKEQQRQYAALAEENED
TDEELMEWKTKFDERIMLLDNKIQKMGRNQQDLDEESSAYRRKLNKCTEEIGKLQRDAEV
PLXCQKKTDSAIERLFARFNLGSTPNSPFSDEVALNLMSQIEVRLMDLNKDLDEKKQSND
QKLKTAWDCYLGASERCNIAEAQKKAKSEINCSVLKRLEETKSNCDSLEIQISDVNISLL
DEREKNMVSIVLLKKEKQLDERNHDEIIQQKQQEVFAIDQKIKVLGHERNLAANDAKERM
ELSIKKRELEDKKKQQNRCIEEYKDRIRVVLKGRVPPDKDLKREVTQALRAVQMEYDDLS
TKSSEAEKEVNMLQMKIDDINNNLNLMNRALLEKWTWRFANEMGSVWRDLICSKYNLDPS
LLLFDSKTPNRVSWIWRSVVNNHFKDDPIGSKLRSLYSFLVGDGKFIRLWLDIWALDYPL
LLIFPRLFSIRLTKQANYLSLGSIALSAGFGMCRSGDGVFTVKSAVNLCSSGSLCSDEAY
FWSKIVWRGQLPPKVESFLWQEESPSHLLFSCSVVWAVWNKFLNFWKIQTVFHYNAKRGK
LDEVEFFFLARFRLASWFLAKNKGVYILKDSLISDPSLGDVCSTHSNMIVSTIPWHPPPM
GFVKINVDATTTKDWKKSGLGGVLKDFSGTTLGSFKEPAGPGPPTFMELKAIQNGLMFYA
DFRARIKDRLIIESDSKMAVDWVKGDELCPHVYAYLVTDIVYWLNMFDGVVRWPVASKEL
KINLLISFSCVFFCHLNSARKRFLEARLNSLEKQASTIDSYPKVLETAQEKKDIHKSKYN
IADGMRQMFDPFERVARAHHVCPCCERPFSAEEEDEFVKKQRVKAASSAEHMKVLAVESS
NAESYFQQLDKLRMVYEEYNKTVKETIPLAEKTLHELTEELDQKSQAHYDVLSVLAQVKT
DKDAIETLMGPVETADRLFQEIXGFKAEVEHLECKFDIGGQGGARTVEEIQLELNNLQSR
RDALYNAVEDLRAEQRYMEKDLQSIQVHWHDAREKKVEVANTLRDFKKAEEEIELLSEER
RQLDLEEKHLAEALNSVVKEKESLLNDYDCLKVKLDEEYEQQQELRRSHRHEAEELYEIN
RKIKAYYDLKKGEKLKELQEQKSLMESQLLSYDARKQEILAELNKSKDLMRNQDQLRRNI
EDNMNYRKIKADVDVLTREIELLQERIMEIGGISKFEGELRKVSEERERLLSELNRCRGT
MSVYQNNISKDKADLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYHNALDKALMRFHS
MKMEEINKIIRELWQQTYRGQDIDCISIHSDSQGAGTRSYSYKVLMQTGDAELEMRGRCS
AGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALLRIMEDRKGQENF
QLIVITHNERFAQLIGQRQHAERYYRVTKDDLQHSIIEAQEIFD
NT seq
5175 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggtggataaaatgctgataaaaggaatccggagcttcgacccgaaannaaaa
aacgtcatcactttctttaaacccctaaccctaatcgttggacacaatggcgctggcaaa
actacaattatagagtgtttgaagctttcttgcactggagagttgcctccaaatgcaagg
tccggccatagtttcattcatgatcccaaggttgcaggggagacggagacaaaaggtcaa
attaagctccggtttaagacagcagcgggaaaagatgtggtctgtataaggtcattccaa
ttgacgctaaaggcttctaagatggagtataaagcaatcgagagtgttcttcagacgcta
aattctcacactggagagaaagaatgcctcagctacagatgtgctgacatggaccgagaa
atcccagctttgatgagtgtctcaaaagctattctggagaatgtgatttttgttcaccaa
gatgaggccaattgggctttacaagatccttcgactttgaaaaagaagtttgatgatata
ttttcagctactagatatacaaaagccttggaggtcnataaaaagcttcacaaagatcag
gctcaagagataaaggcatacaagctgaaactggaacacttacagaccttgaaagatgct
gcatataagcttcgagaaagcatttctcagaaccaagaaaaaacagaatcattgaaaagc
caaatgcaagtcttggagaaaatcattgatgacctggatgctaagattcataatgccgag
ttaaccctgaaggatctacgaaagctagaggaccagaaatcaacaaagactgctgaaagg
agcactttgttcaaggaacagcagagacaatatgcagctcttgctgaggaaaatgaagat
actgatgaagagttgatggaatggaaaaccaagtttgacgagaggattatgttattggat
aataaaattcagaaaatggggcgtaaccagcaggacttggatgaagagagctctgcttat
cggcgtaaattaaataagtgtactgaggagattggcaaacttcaaagggatgctgaggta
cccttgtgatgtcaaaaaaagacagattctgccattgaacgattgtttgcacgattcaat
ttaggatctactccgaatagtccttttagcgatgaagttgctttgaacctcatgagccaa
atagaagtgaggttaatggatctcaataaagatttggatgagaaaaagcaatcaaatgac
cagaagctaaagactgcttgggattgctacctgggtgccagtgagcgttgcaacattgct
gaggctcagaagaaggcaaaatcagaaatcaattgttctgttttgaaacgtttggaagag
acaaaaagtaattgtgattctcttgaaattcaaatttctgacgtcaatatttctctcctt
gatgaaagagaaaagaatatggtgagtatagtcttgctcaagaaagaaaaacaactggat
gaacgaaaccacgacgaaatcatacaacaaaagcagcaggaggtgtttgccatagatcag
aagattaaggtacttggtcatgagagaaaccttgctgctaatgatgccaaagagagaatg
gagctatctataaaaaagagagaattggaggataagaagaaacaacaaaatagatgtatt
gaagagtacaaagacaggattagagtagtgctaaaagggagggttcctcctgacaaagat
ctgaaaagggaagttacccaagctttaagggctgttcaaatggagtatgatgacttgagc
acaaaatccagtgaagctgagaaggaagtaaacatgttgcagatgaaaatagatgatatt
aataataatctaaatttgatgaatagagcacttctagaaaaatggacttggaggtttgca
aatgaaatggggtctgtctggagggatcttatttgttctaaatataatttggacccttct
ttgttattgtttgatagtaagactccaaacagagtatcttggatttggagatcagtggtt
aataaccactttaaagatgaccctatcggctcaaagttaagaagtttgtattctttttta
gttggggatggtaaatttattcgattatggctggacatttgggctttggattatccactt
ctattaattttccctagattgttttccattcgattaacaaaacaggcaaattatttgagt
ttggggagtatagctctttcggctggatttgggatgtgcaggtctggggatggggtgttc
actgtgaaatctgctgtcaatctatgctcatcaggttctttatgttcggatgaggcctac
ttctggagtaagattgtttggaggggtcagctgccaccaaaagtggagtcctttttgtgg
caggaagagtctccttcacatttgttattctcatgttcggtggtgtgggctgtttggaat
aaatttctcaacttctggaagattcaaactgtttttcattataatgctaaaagaggaaag
ttggatgaggttgaattcttcttcttagcaaggtttaggcttgcttcatggttcctagcg
aagaataaaggggtgtatattcttaaagactctctcatttcagacccctccttaggggac
gtttgttcaacccattctaatatgattgtgtctactattccgtggcatcctcctcctatg
ggttttgtgaaaattaatgttgatgcaactacgactaaggattggaagaagagtggttta
ggaggagttttaaaagatttctctggaactacattagggtctttcaaggagcctgcaggt
ccggggcctccaacatttatggagttaaaagctattcaaaatgggctaatgttctatgct
gattttcgagcgaggatcaaagacaggttgattattgaaagtgacagcaaaatggcagtg
gactgggttaagggggatgaattatgtcctcatgtttatgcttatttggttacagacatt
gtttactggcttaatatgttcgatggtgtggttagatggcctgtggcttcgaaagagctt
aagatcaatttactcattagtttttcttgtgttttcttttgtcatctaaattcagctagg
aagagatttcttgaagccagattaaattctttggagaaacaagcttctaccattgattcc
tacccaaaagtactggagactgcacaggagaaaaaagatatccataaaagcaaatacaac
attgcagatggcatgaggcaaatgtttgatccatttgaaagagttgcccgtgctcatcat
gtttgcccctgctgtgagcgtcctttttctgctgaagaagaagatgagtttgttaagaag
caaagagtcaaggcagctagttcagctgaacatatgaaagtgttggcagtggaatcatca
aatgccgagtcttactttcagcagttggacaagcttcgaatggtttatgaggaatataat
aaaactgtaaaggagacaattcctcttgctgagaaaactttgcacgaactaactgaagag
ctggatcaaaagtctcaagcccattatgatgtgttaagtgttttagcccaagtaaagaca
gacaaggatgctattgagactttgatgggacctgttgaaacggctgacaggctttttcaa
gaaattncggggtttaaagcagaagttgaacatttggaatgtaagtttgacatcggaggg
caaggtggtgctagaactgtggaagagatccaattggagctaaacaatttgcaaagcaga
agggatgctttatataatgctgtggaggacttaagggcagaacagaggtacatggagaag
gatttgcaaagcattcaggtgcattggcacgatgcaagggagaaaaaggtggaggtggct
aacacattgcgtgattttaaaaaggcagaagaagagatagagctcttgtctgaggagaga
cgtcaacttgatcttgaggagaagcatttagcagaggctctcaactcggtagtcaaggag
aaggaatcattattgaatgactatgattgcttgaaagtaaaactcgatgaggaatatgag
caacagcaggaacttagacgctcacatcggcatgaagctgaagaactctatgaaattaac
agaaagattaaagcgtattatgatttaaagaagggggagaagctgaaggaactgcaagaa
cagaagtctctgatggaatctcaacttctcagctatgatgctaggaaacaggaaatattg
gctgagctaaacaaaagcaaagacttgatgcgcaatcaagatcaactaagacgtaacatt
gaggataatatgaattacaggaaaataaaagctgatgtagatgtgcttactcgtgaaatt
gagttactgcaagagagaataatggagattggaggtatttccaaatttgaaggcgaactc
cgaaaagtttctgaagaaagggagcgacttctatcagagctcaacagatgccgaggaaca
atgtccgtttaccagaataatatctcgaaggacaaggctgatcttaaacaagcgcaatac
aaggacattgacaagcggtactttgatcagctaatccagcttaagacaactgagatggca
aacaaggacctggacagataccacaacgcacttgacaaagcactcatgcgcttccattct
atgaaaatggaggaaataaacaaaattataagagaattgtggcagcagacatacagaggg
caagatatagattgtattagcattcattcagattctcaaggtgctggaactcgttcttac
agctataaagttcttatgcaaactggtgatgctgagcttgaaatgagaggacgatgtagt
gcgggtcaaaaggtccttgcttctctaatcatacggttggctttagctgagacgttttgc
ctcaactgtggaatcttagcactagacgaaccaaccacaaatttggatggcccgaatgct
gagagtctggcagcagctctccttagaatcatggaggacagaaagggccaggagaatttt
cagctcatagtaatcactcacaacgaacgttttgctcaactgatcggtcaacggcaacat
gcagagagatactatcgggtcaccaaagatgatcttcagcatagtataattgaagcccag
gaaatctttgattga
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integrated database retrieval system
