Hibiscus syriacus (Rose-of-Sharon): 120128825
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Entry
120128825 CDS
T09559
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC120128825
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsyr04131
]
120128825
Membrane trafficking [BR:
hsyr04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
120128825
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps62
VPS13_VAB
VPS13_C
VPS13_M
Motif
Other DBs
NCBI-GeneID:
120128825
NCBI-ProteinID:
XP_039002380
LinkDB
All DBs
Position
Unknown
AA seq
3331 aa
AA seq
DB search
MESVLAVCDATLSNSKAVVEDVNALILQFDNDDSRKTWQSRLQGAIYHSSASAPFTISET
SSDSETEPNEKHDAFDLPMIESVFITGVLDELKISISYNHQHERSFNKVLLAEEHPLXEF
RATGGQVELSIKGSDIFIGTVLXSLEIEDLICCSTVSKPCYLARSFIRSADVHSVLDDGG
IELFPSEGDEKFYEAPEDLIDSAECTSTPRKSSELVSLQKFQSFSRVTGLLPDDELLLGR
EDVELIDTLNSFVKAQIVIYDQNSPLYNNVDMKVTVTLATLSFFCRRPILAIMEFANAVT
IEDDSCESISDNSSAVGEHDISSEDPTDNPQSTRVEEPVVKGLLGKGKSRXIFNLTLNMA
HAQILLMNENETKFATLSQENLLTDIKVCPTCVPILFSINAALGNLRISDDSLPGNHMYF
WICDMRDPGGTSFVELVFTSFNSDDEDYQGYEYSLFGQLSEVRVVYLNRFVQEVISYFMG
LVPNDSKSVVKFKDQVSNSEKWFTTSEIEGSPALRLDISLRKPIILMPRKTDSLDYLKLD
VVHITVQNTFQWLCGTKSDLNAVHFDIMTIKIEDINLNVGTESVLSESIIKDVKGVSIVI
RRSLRDLMHQVPSIEAAIKIEELKAELTNREYMIITECALSNISETPHIVPPLSSDFLKS
SLDAVEDVIPESGVEPRTPNGETWTVMKVSVVINLVEMGLYVGEEWRSPLATVQASDAWL
LYMSNTLDEGILSASLKGFTVIDNRVGTREEFKLAIAMPKNPLFSVADTNDQNISNANNT
KENYIKPRPTMLLVDAKFSKLSTSVSVCIQKPQLLVALDFLLALVEFFVPTVGTMMTNEE
DKKSLHMADAIILDKPTYAQPSAQFSLSPLKPLVADDEKFDHFIYDGNGGXLHLKDREGV
DLAAPSNEALIYVGNGKKLQFKNVLIKNGHYLDSCISLGTNSGYCASKDDLVYLEGGEED
LEVDTSREIANHITPQNAVVDRSAEFIIEFQAIGPELTFYNASKDVGESSVLSNKLLHTQ
LDAFGRLILKGDTVEMTSNALGLTMESNGVRILEPFDTSIKYSNASGKTNIHLSVSDIFM
NFSFSILRLFLAVEEDILAFLRRTSREMTVCCSQFDRVGTLEVYPNNDQIYAFWRARAPV
GFAVLGDYLTPLDKPPTKGVLAVNTNYVPVKRPTSFKQIWPPLDSGGISDEFELDSKTLS
NGVLGEGEICCSVWFPEAPEGYVALGXVVSPGKLQPPPSSIFCILNSXVSPCSLRDCITT
SDTSCLAFWRVDNSLGTFLPAEPTNLSLLARPYELRHVIIMSPEVYPKASRSSDIQTAVS
GRISNQQSDHSIVVNSGRRFEAVASFRLVWWNRNSSSRKXLSIWRPLVPQGMVYFGDIAV
QGYEPPNTCIVLHDAEDEDLFKAPSGFQPVGQIKKQRGMESVSFWLPQAPPGYVSLGCIA
SKGTPKQQDFCTLRCMRSDMVTGDQFLEESVLDPTDAKFGTVPFSIWVVANDLGTFFVRA
GSRKPPRRFALKLADPYLHSGSDDTVIDAEIRTFSAALFDDYGGLVVPLFNISLSGIAFS
LHGRPEYSNTTVSFSLAARSYNDKYESWEPIVEPMDGFLRYQYDPSSPGAASQLRFTSTR
DLNLNISVSNANMIIQAYASWNNLGDIHQYYKRPEARFPTSATRSIVNIHQKRSYYIVPQ
NKLGQDIFVRAMERKGFSDITMMPAGDTKPIKVPXFRNMPDSHLKGKLCRKIRTMVTIII
ADAMLPRVEGLSSHQYTVAVRLSPSHSLPSESLHHQQSARTCGRISSNMSSDIELVDWSE
IFFFIVDSPDSYTVELIVADVGKGDAIGFFSAPLNQIAMHTPDGSHDYSNSLMWMDLSLP
NTTQVDGSRKHSSGRLRCAVILSSKSDVDETSEPFVGGRKFGFIQISPSMGGPWTTVQLN
YAAPXACWRLGNDVVVGEVSVKDGNRYVNIRSLVSVHNNTDFILDLCLVPKKQISLHTTN
EILLGQLKPGDTVPLPLSALNQSRPFVFQLRPSEFDGSNKYSWSSVVEKPGQREVSEKAK
GTSGIYVSALTESEELLCCNQLIETSSNASAHKLWFCLGIQATEISKDIRSDSIMDWSLV
VKSPLSISNYLPLTAEYSILEMQPSGHFIACSRGIFHPGRTVNIYNADIRNPLFFTLLPQ
RGWMTLNEAVLISHPCEIPSKSISLRSSISGRIVQLIIEHNSDKEQTILSKIIRVYAPYW
FSVSRCPPLTYRLVDMGGKKRTRKIEFPFRAKKKIQXIIEEITDEEMYSGHTIASSLNFN
LFGLCVAITESSNEHFGTAKDLSPLVDMDGSVDLYAYNADGKCMHLFVSAKPCPYQSVPT
KVEILLSALKMYVEDESNILRASDTRISFVHCENDGTDKLQIRLEDTDWSFPVQIVKEDT
ISLVLRGHGGTRTFLNVEIRGYEEGSRFIVVFRLGSTKGPIRIENRTFDRTISICQSGFG
EYAWISLGALSTTIFSWEDPYGEKFIDVKINGDCNNRIWKVNLESFVQSPTGEGDLGMQL
HVFEIGNIKVVRFTDNRTWKLSSHGDRPLMAAGKPQVDVTPIEVIIELGVVGVSLVDHMP
RELFYVYLDRAFISYSTGYDGGTTSRFKLILGHLQIDNQLPLTLMPVLLAPEQMSDIHHP
VFKTTITMRNVNSDGIQVYPYVYIRVTDKSWRLNVHEPIIWALVDFYNNLQLDHIPQSSS
ITQVDPEIRVDLIDVSELRLKVSLETAPAQRPQGVLGVWSPILSAIGNAFKFQVHLRRVI
RKDRFMRRSSILPAIGNRIWRDLIHNPLHLLFSVDVLGMTSSTLASLSKGFAELSTDGQF
LQLRSKQVSSRRITGVRDGIVQGTEALAQGVAFGVSGIVRKPVESTRQEGFVGFAHGIGR
AFLGFIVQPVSGALDFFSLTVDGIEASCSKCLEALTNNSTFQRIRNPRAIHADGILREYS
EKEATGQMVLYLAEASRRFGCTEIFKEPSKFACSDYYEEHFIVPYQKILLVTNKRVMLLQ
CSSLDKMDKKPCKIIWDVPWEELMSLELAKAGSHIPSCLLLHLKNFRRSEAFVRVIKCSV
EEVEGTEPQAVKICSVVRKMWRAHQSDPNSIVPKVPSSQRHLHLSWSETDKKAPHALKKS
IIKSGELSASISASDGTKFIEHSVNFLKIWSSEREVNGRCALCRKQVADDGGVCSIWRPI
CPEGYVFIGDIARVGSHPPNVAAVYRKIDNLFALPVGYDLVWRNCLDDYTTPVSIWYPRA
PAGFISPGCVVVADFAEPEADLVHCVAETLGEETTFEEQKVWFAPESYPWGCHVYQVQSD
ALHFVALRETKEESGWKPTRVRDDFQPLQSE
NT seq
9996 nt
NT seq
+upstream
nt +downstream
nt
atggaatctgtattggctgtttgtgatgccacactgtcaaatagcaaggctgtggtggaa
gatgtgaatgcactaatattacagtttgataatgatgattcaaggaaaacatggcaaagc
cgcctgcaaggagctatatatcattcatcagcttctgcaccttttactatctctgaaact
tcatcagactcggaaacagaacccaatgagaagcatgatgcatttgatttgccgatgata
gaaagtgtttttataactggtgttcttgatgagcttaagatcagtattagttataatcat
cagcatgagcggagcttcaataaggtgcttcttgctgaagagcatccactanttgaattt
cgagcaacaggtggtcaagttgagctttcaataaaagggagtgatatttttattggcact
gttctgnaatctttggaaattgaagatttgatttgctgcagtactgtgtcgaagccttgc
tacttggcaagatcttttatacgaagtgcagatgtacattcagtattggacgatggtggg
attgagttgttcccaagtgaaggagatgaaaaattttatgaagcccctgaagatttgatt
gattctgctgagtgcacatccacacctagaaaatcatctgagttagttagtttgcaaaaa
tttcagagttttagtcgagtaactggtttactccctgatgatgaacttcttctgggaagg
gaggatgttgaactaattgatacattaaacagttttgtaaaagcacaaattgttatttat
gaccagaactctcctctgtacaacaatgtcgacatgaaggtcactgtgactctggctact
ttgtcatttttctgtcgtagaccaatccttgccattatggaatttgctaatgctgttact
attgaggatgatagctgcgagtctattagtgataattcttctgcagttggtgaacatgat
atttccagtgaagatcctactgacaatccacagtcaaccagggtggaggagcctgtggtc
aaaggtctgctaggaaaaggaaaatccaganttattttcaacttaacattaaatatggct
catgctcagattttgttgatgaatgaaaatgaaactaagttcgctactttgtcgcaagaa
aatctgcttactgatataaaggtctgccctacctgtgttcccatcctctttagtataaac
gcagcattaggaaatttgcgaataagtgatgacagcctccctggcaatcatatgtacttc
tggatctgtgatatgagagatcctggaggcacttcatttgtcgagctggtttttacttca
ttcaacagtgatgatgaagattaccaaggttatgaatatagcctgtttggccaactttct
gaagtacgcgttgtttacttgaatcgctttgtgcaggaggttattagttactttatgggt
cttgttcccaacgattcaaaaagtgtagtcaaatttaaagatcaagtttcaaactcggag
aagtggttcaccactagtgaaattgaaggatcaccagctttaaggttggatatttcacta
aggaaacctataattttgatgcctcgcaagacagacagcctcgattatctgaagcttgat
gtcgttcatattacggttcagaataccttccaatggttatgtggcactaaaagtgacttg
aatgctgtccattttgatataatgacaatcaagattgaggatatcaatttaaatgttggt
actgaatcagttttaagtgaaagtattattaaggatgtcaaaggggtttctattgtcatc
cggaggtctcttcgagacttaatgcatcaagtaccaagtattgaagctgccatcaagata
gaggaactgaaagcagagttgacgaacagggagtacatgattattactgagtgtgcattg
tctaatatatctgagactccgcatattgtgccaccattaagcagtgattttctgaaatca
tcattggacgctgtagaagatgttattcctgaaagtggtgttgagcctaggactccaaat
ggtgaaacttggactgtcatgaaggtctcagttgtcatcaatcttgttgaaatgggctta
tatgttggggaagaatggcgttcacctctggccactgtgcaggcaagtgatgcctggctt
ctctacatgtctaatactttagacgaaggtattctatcagcaagtcttaagggtttcact
gtgattgataaccgtgtgggaaccagagaagagtttaagttggcaatagcaatgccaaag
aaccctctattttctgttgctgataccaatgaccagaacatatccaatgcaaacaataca
aaagagaattatatcaaaccacgtcctacgatgcttcttgttgatgcgaaatttagtaaa
ttgtcaacatctgtttccgtttgtatccagaagcctcagttgcttgtagcacttgatttt
ctgctggcacttgtcgagttctttgttccaacagttggcaccatgatgacaaatgaagaa
gataagaagtccttgcatatggcagatgctattattctagataaaccaacatacgcacag
ccatctgctcagttctcactctctcctttgaaacctttagttgctgatgatgaaaagttc
gatcattttatttatgatggtaatggtgggntattgcatttaaaagatagggaaggagtt
gatcttgctgcacctagtaatgaggctttgatatatgtgggaaatgggaaaaagttgcaa
tttaagaatgttcttatcaagaatgggcattatttagattcatgtatttccctgggaacc
aacagtggctactgtgcttcgaaggatgatctggtctacttagagggaggagaggaagat
cttgaagtggatacttcaagggaaattgctaatcacatcacacctcaaaatgccgttgtt
gacagatctgcagagtttatcattgagtttcaggcaattggtccagaactgaccttttat
aatgcatcaaaagatgtgggagaatcttcagtcttgtctaacaaacttttgcatacccag
ttggatgcttttggaaggcttattctgaaaggtgatactgttgagatgacttcaaatgct
cttggcttgacaatggagagtaatggagtcagaattttggagccttttgacacctccatt
aagtattctaatgcatctggaaagacaaatattcatttatctgtttcagacatattcatg
aatttttcattcagcatccttagactgtttttagctgttgaagaagatattttggccttt
ctaaggagaacgtcaagggaaatgactgtctgttgttcccagttcgacagagttggaaca
ttagaagtatatcccaacaatgaccagatatatgccttttggagagctcgtgcacctgtt
ggctttgctgttcttggcgactatttgacaccattggacaaaccacctacaaaaggagtt
cttgctgtaaacaccaactatgtgccagtcaagagacccacatcctttaaacaaatttgg
ccgcctttagattctggaggcatctctgatgaatttgaactcgattccaaaacattgtca
aatggggtgcttggtgagggagaaatctgctgttctgtttggttccctgaagcacctgaa
ggttatgttgcattaggtnttgtggtttcccctgggaagttgcaaccaccaccatcttca
attttctgcatcttgaattctnntgtttctccttgttcactcagggactgcattaccacc
agtgataccagttgtctggcattttggcgcgtggataattctcttgggaccttcttgcca
gcagaaccaacgaatcttagtttgctagctagaccatatgaattacgccatgtaattatt
atgtctcctgaagtatacccaaaagcatctagaagttcagatatccaaactgctgtatct
ggtcgcatcagcaatcaacagtcagatcattcaattgttgtaaattctggtcggcggttt
gaagctgttgctagttttaggttggtgtggtggaatagaaattcaagctcaaggaagnaa
ctatccatatggcgtccattggttccccaaggaatggtgtattttggcgatattgctgtt
caagggtacgagcctccaaatacatgcattgttcttcatgatgctgaagatgaagatctt
ttcaaagcaccttcaggcttccagccagttggacagataaagaaacagagaggaatggag
agtgtctctttttggttgcctcaagcccctccaggttatgtttcgttaggttgtattgca
tctaaggggacaccaaagcaacaagatttttgcacattaagatgcatgcggagtgatatg
gtaactggtgatcaatttttggaagaaagtgttttggacccaacagatgccaagtttggc
acagtaccatttagcatctgggttgttgctaatgacttggggactttttttgtccgtgct
ggatccagaaaacctccaagaaggtttgctctaaagctagcagatccatatttgcacagt
ggttcagatgatactgtcattgatgctgaaataaggaccttttctgctgccctttttgat
gactatggtggcctggtggttccattgttcaatatatcattgagtggaatcgcattcagt
ttacatggaagacctgagtactcaaatactactgttagcttctctttggctgccaggtca
tataatgataaatacgaatcatgggaaccgattgtcgagccaatggatgggtttttaagg
tatcagtatgatcctagctcccctggagcggcttctcagttacgtttcacctccaccagg
gatctcaacttgaatatctcagtgtccaatgctaatatgattattcaagcttatgcaagc
tggaataatcttggtgatattcatcaatattataaaagaccagaagcacgttttccaacc
tctgcaacaagatcgattgttaatattcaccaaaaaagaagttattacatcgtcccacag
aataaacttggtcaggatatttttgttcgtgccatggagaggaaaggtttctcggatatt
actatgatgccggctggtgatacgaagcctataaaagttcctngcttcagaaatatgccg
gactctcacttgaaaggaaagctgtgcaggaaaataagaacaatggtaacaatcattata
gcagatgcaatgttacccagagttgagggattgagttctcatcagtatactgtggctgtt
cgcctttctccaagccatagccttccaagtgaatcactgcatcaccaacaaagtgcacgg
acatgtggacgcatctcaagtaacatgtcttctgatattgaattggttgactggagtgaa
atatttttctttatagttgactccccagactcgtatacagtggagctaattgttgctgat
gtaggaaaaggtgatgctattggatttttctcagctcctctgaatcagatagccatgcat
actcccgatggttcgcatgattactccaattccttaatgtggatggacttatccttgcca
aataccactcaagtagatgggagcaggaaacattcaagtgggagattgagatgtgctgta
attttgtcatcaaaatctgatgttgatgagacaagtgagccctttgtcggtggcagaaaa
ttcggattcattcagataagccctagcatgggaggaccttggactactgtgcaactcaac
tatgcggcaccanctgcttgttggcgcttaggcaatgatgttgtggttggtgaagttagt
gtgaaggatggcaacagatatgtaaatattaggtcactggtttctgtgcataataacaca
gatttcattcttgatttatgtcttgtaccaaagaaacaaatatcacttcacacaaccaat
gagatacttttgggccaattgaaacctggagatacagtacctcttcccttatccgcctta
aatcagtctagaccatttgttttccagttgcgaccttcagaatttgatggttctaacaag
tattcttggagctctgtagttgaaaagcctggtcaacgggaggtttctgaaaaagctaag
ggcacttctgggatatatgtatcagctctcaccgagtctgaggaattgctatgctgcaac
cagctaattgagacctcttctaatgcctctgcacataaactatggttttgcttaggcata
caagcaacagagatatcaaaagacatccgttccgattctatcatggactggagtcttgtg
gtcaaatccccattgtctatctccaattatcttcctcttactgctgaatattctatcctt
gagatgcaacctagtggtcatttcattgcctgctccagaggaatatttcaccctggaaga
actgtaaatatttacaatgctgatatacgtaatcctttgttcttcacactacttccacag
agaggatggatgacattaaatgaagctgttctgatatctcatccttgtgaaattccatcc
aaatcaataagcttaagaagttcaatttctggaaggatagttcaactcattattgagcat
aattctgacaaggaacaaacaattttgtcaaaaataatcagagtctatgctccttactgg
ttttcagtttccagatgtccgccacttacataccggcttgttgatatgggagggaagaaa
cgcacaagaaagattgagttcccatttcgtgctaaaaagaaaatacagngaatcattgag
gaaataactgatgaggaaatgtatagtggtcacacaattgcctcatcattgaactttaat
ttgtttggtctgtgtgtagcaattacggagtctagcaatgagcacttcgggaccgctaaa
gatctttctccccttgtggacatggatggctctgtggatctctatgcttataatgctgat
ggaaaatgtatgcacctttttgtttctgcaaagccctgcccctatcaatctgtccctaca
aaggtagaaatattactcagtgctctaaaaatgtatgttgaagatgaatctaatattctc
cgcgcatctgatacaagaatctcctttgtacattgtgagaacgatgggacagataaactt
cagataagactagaagatacagattggtcatttcctgttcaaatagtgaaagaggatact
atctcattggttttgaggggacatggtggtacaaggacttttttgaatgtagaaatacgt
ggctatgaagaaggatcacgttttatagttgtattccgccttggatcaaccaaaggtcct
atcaggattgagaacagaacctttgatagaacaataagtatttgccaatctggatttggt
gagtatgcatggatcagtttaggagctctttcaactacaattttttcctgggaagatcca
tatggagaaaagttcattgatgttaaaatcaatggagattgcaataaccgaatctggaaa
gtcaatttggaaagttttgtgcagtctcctacaggtgaaggagatcttggaatgcagttg
catgtttttgaaataggtaatataaaagttgttagatttactgataatcggacatggaag
ttgagttcacatggagataggcctctgatggctgctggaaagccacaggttgatgttaca
ccaatagaagtcatcattgaattgggagttgttggggtatctcttgtggaccacatgcca
agagagctcttttacgtgtaccttgacagagcctttatatcatattctacaggctatgat
ggtggaaccaccagcaggttcaagctcatactgggacatttgcaaattgacaaccagctt
cctttaactttgatgccagtgctattagcacctgagcagatgagtgatattcatcatccc
gtatttaagacgactattacaatgcgaaatgtgaactctgatggaattcaggtgtatccg
tatgtctatatacgggtgactgacaagtcttggaggcttaatgttcatgaaccgatcatc
tgggcattagttgatttctataacaatcttcagctagatcacattccccaaagttcaagc
atcactcaagttgacccagagatacgtgttgacctgatagatgtttcggaattaaggttg
aaagtgtctctggagacagcaccagctcagagacctcaaggggttcttggtgtgtggagt
cctatactttctgctattggaaatgccttcaaatttcaggtgcatctgaggagggtaata
cggaaagacagattcatgcggagaagttccatacttcctgcaattggaaaccgtatttgg
agagatttgattcataaccctcttcatttgttattttcagtagatgtacttggtatgact
agttcgaccttggcttctttgagtaaaggatttgctgagctttcaactgatggacaattt
ctccaattgcgctcaaagcaggtttcatcaaggagaatcactggagtacgagatggaatt
gttcaaggaacagaagcccttgcacagggtgttgcttttggggtgtctggaattgtgaga
aaaccagtggaaagtaccagacaggagggttttgtgggatttgctcatggaattggtcgt
gctttcttaggatttattgttcaaccagtcagtggagcattagatttcttctcattgacc
gttgatggaattgaagctagttgttccaaatgtttggaggctttgactaacaatagcacc
ttccagagaattagaaacccccgagctattcatgctgatggcattcttagagagtactct
gagaaagaagctactggtcagatggtgctctatctggcagaagcaagtcgacgttttggg
tgtactgagatatttaaagagccctctaaatttgcttgctctgattattacgaagagcat
tttattgtaccataccaaaagatacttctagtgaccaataaacgagttatgctattgcag
tgttcatctctcgacaagatggacaaaaaaccttgcaagatcatatgggacgttccatgg
gaagaactcatgtcgctggagttggcgaaagcgggcagtcatataccttcttgcttactc
ctccatcttaagaattttaggagatcagaagcttttgttagagtcataaaatgcagtgtt
gaagaagttgagggaacagaaccgcaagctgttaagatctgctcggtagtgcgtaagatg
tggagagcacatcaatctgacccgaacagcattgtgccaaaggttccttcaagccagagg
catctgcatttatcttggagtgagactgataagaaagcaccacatgccctgaagaaatcc
atcattaaatcaggagagctttctgcatcaatttctgcatctgatggaacaaaatttatt
gaacacagtgtaaactttctgaagatctggagcagcgagagagaagtgaacggccgatgt
gcattatgtagaaaacaggtcgccgatgatggtggagtatgtagcatttggaggcccatt
tgtccggaagggtatgtgttcattggtgacatagctcgtgtcgggagccatcctcctaac
gttgctgctgtttaccggaaaattgacaatctatttgcgcttcctgtaggttatgacctg
gtatggaggaactgtctagatgattacacgactccggtctcgatctggtatccacgggct
cctgcggggttcatctctcctgggtgtgttgttgtggcagatttcgccgagcctgaagct
gatttggtacattgtgtggcagaaacacttggggaggaaacaacatttgaggagcaaaaa
gtttggttcgcaccggaatcatacccgtggggttgtcatgtgtatcaagtccaaagtgac
gctcttcattttgttgctctaagagaaactaaagaagaatccgggtggaagcccaccagg
gttcgtgatgatttccagcctttgcaatccgagtaa
DBGET
integrated database retrieval system
