Hibiscus syriacus (Rose-of-Sharon): 120129983
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Entry
120129983 CDS
T09559
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
120129983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsyr03021
]
120129983
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120129983
Transcription machinery [BR:
hsyr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
120129983
RNA polymerase I system
120129983
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
120129983
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
KOW6_SPT51-2
Spt5-NGN
KOW4_SPT5
KOW2_Spt5
KOW7_SPT5
KOW
KOWx_SPT5
KOW5_SPT5
Spt5_N
GPKOW_C
DUF4438
Motif
Other DBs
NCBI-GeneID:
120129983
NCBI-ProteinID:
XP_039003283
LinkDB
All DBs
Position
Unknown
AA seq
963 aa
AA seq
DB search
IADFIVETGGDLPDEDVGKRMHRRPLPLREDEQEDVEALERSIQARYARSSQTEYDEETT
DVEQQALLPSVRVPKLWMVICAIGGERETAVCLMQKYIDNGSELQIRSVTSLDHLKNYIY
IEADKEAHVREAIKGLRSIFGAKIMLVPIREMTDVLSVESKAIDLSRDTWVRMKIGKYKG
DLAQVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVPKKKAFVPPRFMNVDEARELHIR
VERRQDSITGAYFENIGGMLFKDGFLYKTVSMRSISAQNIKPTFDELEKFRTPSNNGEGD
MAGLSTLFAKRKKNHFMKGDAVIVVKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVN
EKELCKYFEPGNHVKVVSGTKESATGMVVKVERHVLIILSDTTKEHIRVFADDVVESSEV
TTGVTKIGEYELHDLVLLDNNSFGVIIRVESEAFQVLKGVPERPEVSLVKLREIKCKLEK
KFNVQDRYRNIVSVKDVDRILEGPFKGKQGPVEHIYKGVLFVYDRHHLEHAGFICAKADS
SCIVGGSRSNGNRNGDSLSRFGSFKAPPRVPPSPRRFSRGGPPFDSGGRHRGGRGGHDAL
IGTTVKIRQGPFKGYRGRVDIKGQSVRVELESQMRVVTVDRNFVSDNVVISTPHRDTSRY
GMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRARNPYAPMSPPRFICRFHI
SSASWMANGWVWGWGGGMRTRPARLPSLIGKKEICLLGTSPQYQPGSPPSRAYEAPTPGS
GWGSTPGGNYSEAGTPRDGSSAYANAPSPYMPSTPSGQPMTPKSGSYIPGTPGGQLMTPG
TVGLDVMSPVIGADNEGPWFMPDILVNVHKSGDETLGVIQEVLQDGSCKVALGSHGNGDT
ITVMASEMEIVPPRKSDKIKIMGGSLRGVTGKLIGVDGTDGIVRIDDSLDVKILDLVILA
KLP
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
attgcagacttcatagttgagactggaggtgatctaccagatgaagacgttggtaaaagg
atgcaccgtcgcccattaccactccgggaggatgaacaagaagatgttgaagctcttgag
agaagtattcaggctaggtatgcaagatcaagtcagacagaatatgatgaggagacaact
gatgtggaacagcaagcacttttgccatcagtaagagttccaaagctgtggatggtgata
tgtgcgattggtggtgaacgggaaaccgcggtttgcctcatgcagaaatacattgacaat
ggatctgaattgcaaatcaggtctgttacttcccttgatcaccttaaaaactatatctat
attgaagcagacaaggaagcccatgtgagagaggctatcaaaggtctgcgtagtatattt
ggagcaaagattatgcttgttccaataagagaaatgactgatgttttatcagtggaaagc
aaagcgattgatctttctagagatacctgggtcagaatgaagattgggaaatacaagggt
gatctcgctcaagtagttgatgtggataacgtgcgacagagagtcactgtgaaattgatc
cctaggatcgacttacaggctcttgctaataaattggaaggaagggaagtcccaaagaag
aaagcttttgtccctcctcgttttatgaatgttgatgaagctagggaacttcatattcgt
gtggagcgcagacaagattcgatcaccggtgcttactttgagaatattggtggtatgttg
tttaaagatgggttcttgtacaaaacggtgtcaatgagatctattagtgctcagaacata
aaaccaacatttgatgaacttgaaaagtttcggacacctagcaataatggagaaggtgat
atggctggtttatcaactttgtttgcgaaaagaaagaaaaaccatttcatgaagggtgat
gcagttattgttgtcaagggggatctgaaaaatttaaagggatgggttgaaaaggttgag
gaagagaatgtccatatcagaccagaaatgaaaggccttcctaaaactcttgctgttaat
gaaaaagagctatgtaagtactttgagcctgggaatcacgtgaaggttgtgtctgggacg
aaggaaagtgcaactggtatggttgtcaaggtcgagcggcatgttctcatcattttatct
gatacaaccaaagaacatatccgtgtttttgctgatgatgttgttgagagctctgaagta
actactggtgttacaaaaattggggagtatgagcttcatgaccttgtgctactagataac
aatagctttggtgtaattatacgtgtagaaagtgaagcgtttcaggttcttaagggtgtt
ccagaacgaccagaggtttctcttgtaaaattgagggaaatcaaatgtaagcttgagaag
aaatttaatgtgcaagacagatataggaatattgtttctgtgaaagacgtggataggatc
cttgagggtccttttaaaggaaaacaaggccctgtagagcacatatacaaaggagtcctg
tttgtgtatgatcgacatcaccttgagcatgctggctttatatgtgctaaagctgattct
tcttgtatagtgggaggatcacgttccaatggtaacagaaatggcgattctttatcgaga
tttggtagcttcaaggccccaccacgtgtaccaccatcaccaaggagattttctagggga
gggcctccgtttgattctggtgggagacaccgaggtggtagaggaggacatgatgctttg
attggtactactgtgaaaattcgacagggcccttttaagggttatcgtggacgtgttgat
attaaaggtcaatcagttcgagttgagttggagtctcaaatgagggttgttacagttgac
cgcaattttgtatctgataatgtagttatttcaacaccccaccgggatacatctcgatat
ggtatgggaagtgagacacctatgcacccttcacgaactcctttacatccatacatgact
cctatgagagatcccggagctacaccaatccatgatggcatgagaacacctatgcgtgac
agggcaaggaatccttatgcaccaatgagtccgcccaggtttatttgtcgattccatata
tctagtgcatcatggatggcaaacgggtgggtatggggatggggagggggtatgcgcacc
cgacccgcccgtttgccatccttaattgggaagaaggaaatctgcctcttgggaaccagt
ccacagtatcagcctggaagtccgccttcaagggcatatgaagcacctactcccggttca
ggttggggtagtactcctggtggtaattacagtgaggctggaacaccaagggatggcagt
tcggcatatgccaatgctcctagtccttatatgccatcaactcccagtgggcaacctatg
acaccaaaatcgggatcctatattccaggtacacctggagggcagctgatgacacctgga
actgttggtcttgatgttatgtctcctgtaataggtgctgacaatgaaggaccatggttc
atgcctgatattttggtcaatgtgcacaaatctggagatgagactcttggagttatccaa
gaggtgcttcaggatgggtcatgtaaggtggcccttggatcacatggcaacggggatacc
ataactgtgatggctagtgagatggaaatagtgccaccaaggaaatcggacaagatcaaa
atcatgggtggctcacttcgtggtgttactggtaagttaattggtgtggatggaacggat
gggattgtaaggattgatgacagccttgatgtcaagattttggacttggttatactagcc
aaattgccctag
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integrated database retrieval system
