Hibiscus syriacus (Rose-of-Sharon): 120130459
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Entry
120130459 CDS
T09559
Name
(RefSeq) uncharacterized protein LOC120130459
KO
K19026
spatacsin
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsyr03400
]
120130459
DNA repair and recombination proteins [BR:
hsyr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
120130459
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
120130459
NCBI-ProteinID:
XP_039003620
LinkDB
All DBs
Position
Unknown
AA seq
3211 aa
AA seq
DB search
MDHTASGEGPAILQLHKWGPSELPLNLSEYREAFISPTRELLLLLSYQCQALVLPLTTGG
SVDADISESHHDERPQNLDLLACSSNLKDDIPCTSGSAIDSDNDISLEPGFSRCNGYPFI
YDVNSLAWGVCGDTYNQHKDGSFRELLFVSGNQGVMVHAFSQPDKSCVTGAILEGEFREG
TWVEWGPSASSFQHINEEKTIDLSFEASQNTIEKSITNGNVGVPDKISKKVGDDVLPGTD
TSKRWLRSCFTKAETVEYEGCIWTRFPQKSSVPCFAKVVSFGIFTSDFPVLRFLSKKNSS
SSGEGCRETIRNLENGSHENVELDTSDVGSSTSYKCSRVFSCNSHHLIGFFLTLMNSASA
NASDGSEKRIKNIIVIARLDIWGIQWVSLVKLPQNENTFPLDDWKDFHFSGDFLICLNAS
GLVFFYNAVSGEHVAHLDILRACELKCSANLCEPERSTLDDADMQNKSNYQHGDLFCRRT
FKRLLVASYTPLVAVVDEFNILYVIYAGDCLPDKCYAFEKLLPHYQHLGLGMLVGWDVGS
SDVSHQRIYTGSPNSCNLNRSSKMNEIVSFCDNIGNNILQKIHGWKRYGNGCLPDSVLNG
FSSTSKLMNEKVHDSKIHFHLMRKIFLPTDRYSDDDCICFSSFGITRLIRRQNIKDHKSS
QIVHFNLHTDSLVHDDRFLNLGSKKFSLQGREEVSIGEAVGCTFQGCLYLVTDGGLSVVL
PSVSVSSNLLPIETHGCQQPGIVTGIGCHPKNIPGLEEPKMLWSPWKVEILDKVLLYEGP
EEADRLCFENGWDLKFSRMRRLQIALDYLKYDEVKQSLEMLVGVNLAEEGVLRLLFAAVY
RMFGKNGNDNEVSAASRLLKLATWFATKMIREYGLNQLKRDAFMFQGLDRPRVLALPSIL
PDKTQNEVGTSTRLREMAHFLEIIRNLQYQLRAKLKKPGQGLVDRKEQLSMVDPSFLRGE
FQFSTPSVDWLETLNEHEHQIPALAFPPNNNEKLALVPKNAISTEAYVDLEDPSEATALI
PRGMGSGKILPTENPKEMIARWEIDKLDLKTVVKDALLSGRLPLAVLQLHLHRSSEFTSD
EEPHDTFNEVSDIGRDIAYDLFLKGETELAIATLQRLGEDVEICLKQLLFGTVRKTLRVQ
IAEEMKRYGYLGSVEWKVLERISLIERIYPSCSFWKTFHGHMKECMHVSSTLNSPEGIHL
CLLDFFNNLKIECGEIDGVVLGAWANVNENSSDNVLEQDDVRAGYWVAAAVWSTAWDQRT
FDRIVLDQPFVMGVHVSWESQLEYHIYHNDWEEVFKLLDLIPTSVLSNGSLQIALDDFQP
ASTIECSGFPDFGNYMYSVEELDAVCMDVPDVKIFRLSSIFMCSTWLRILIEQELVKKLI
FLKEYWEGTAEVASLLARSGFIMKRFKISFEDNSTGRSWDPDFSSRNEIFRADTVQALDK
LFIRYCAQNNLSNLLDLYLDHHKLVVDDESLFSLQEAAGDCHWARWLLLSRFKGHEYDAS
FENARSIMSRNLIHDGSLHGHEVDEIIHTIDDIAEGGGEMAALATLMYASAPIPNCLISG
SVNRHNSSTAQCTLENLRPTLQHYPTLWRTLVSGCFGQDTSFGFLRTGAKNALAEYLNWR
DNIFFSTGRDTSLLQMLPFWFPKAVRRLIQLYVQGPLGWQSFSGLPTGESLLDRDIDFYI
NADEQAEINAISWEETIQKHVEEELYHSSLKETGLGLEHHLHRGRALAAFNYLLISRVEK
LKMEGRSNASGQTNVQSDVQTLLAPISEKEECFLSSVMPFAITHFEDNVLVASCSFLLEL
CGLSASMVQVDVASLRRISFFYKSIQHKENSRQLSSKGSAFHAATHDDSIMESLAQALAD
ECMHGDNSKQRGSLISVSSKQHSRALMLVLQHLEKASLTQLVEGKTCGFWLLTGNGDGTE
LRSQQKAASQYWSLVTLFCQIHQLPLSTKYLAVLARDNDWVGFLCEAQIGGYSFDTVFQV
ASKDFSDPRLKIHILTVLKSMQSKKMASSQSDLDKKSESPFPEENVYIPIELFRVLADCE
KQKTPGEALLLKAKDFSWSILAMIASCFPDVSPLSCLTVWLEITAARETKFIKVNDIASQ
IADNVAAAVEATNSLSCGSRSLSFHYNRRNTKRRRLLESLCRTPFPGASDSSTRIFSAVG
STAGEEKKVELGEQIIVSSDFNEGPASLAKMVAVLCEQRLFLPLLRAFELFLPSCSFLPF
IRALQAFSQMRLSEASAHLASFSARIKEEPSHLQTNNGREGQIGISWISSAAIKAADATI
STCPSPYEKRCLLQLLAAADFGDGGSATAHYRQLYWKINLAEPSLRKNDDLHLGNETLDD
ASLLTALEENRQWEQARNWARQLEASGGPWKSTFHQVTETQSESMVAEWKEFLWDVPEER
VALWGHCQTLFIRYSYPALQAGLFFLKHAEAVEKDLPARELHEMLLLSLQWLSGMITKSN
PVYPLHLLREIETRVWLLAVESEAQGKSEGEISLTGSSQNPLTRNISNIIDRTASIITKM
DNHINSMKNVTVEKYDAREPLQRNQALDSSSSTVTIRSSKTKRRAKGYASSRRPMVDLVD
KGSEPEDGSNPPKPRNDLQLQDESLKIEISFSKWEERIGPGELERAVVSLLEFGQISAAK
QLQQKLSPGQMPSEFILVDAALKLAAMSTPTSQIPIEMLDEELFSVIQSYKPINQHLIYP
LQVLETLATVFTEGSGRGLCKRIIAVVKASNVLGLSFSEAFDKQAIELLQLLSLKAQESF
EEANLLVRTHVMPAASIAQILAESFLKGLLAAHRGGYMDSQKEEGPAPLLWRFSDFLKWA
ELCPSEPEVGHALMRLVITGQEIPLACEVELLILSHHFYKSSECLDGVDVLVALAATRVE
AYVSEGDFACLARLITGVGNFYDLNFILGILIENGQLGLLLQKYSAAANTTAATVEADRG
FRMAVLTSLNHFNPYDLDAFAMVYNHFDMKHETASLLESRAEQASLQWFECYDRDQNEDL
LESMRYYIEAAEVHSSIDAGNKTRRACAQASLVSLQIRIPDSKWLHLSETNARRALVEQS
RFLEALIVAEAYGLNQPTEWALVLWNQMLNPELTEMFVAEFVAVLPLQPSMLIELARFYR
AEVAARGDQSQFSVWLTGGGLPAEWAKYLGRSFRSLLKRTRDLLLRLQLATSATGFTDVV
DACMRALDRVPDTAAPLVLRKGHGGAYLPLM
NT seq
9636 nt
NT seq
+upstream
nt +downstream
nt
atggaccatactgccagtggtgagggtcctgctatactgcagttacataaatggggtccc
tcagagttgccactcaatctgtcggaatatcgtgaagcctttatatctccgacaagggag
ttactgttattgctttcataccaatgccaagctttggtacttcctttgactacagggggc
tctgtagatgctgatatttctgaaagtcatcatgacgagagaccccaaaatttagatttg
ttagcttgtagttctaatttaaaggatgatattccttgcacttctggatcagcaatagat
tctgataacgatatttcccttgaacctggattttcaaggtgtaacggttatccctttatt
tatgatgtaaactcattggcttggggtgtgtgtggggatacctataatcagcacaaagat
ggttcatttagagaacttctttttgtgtctggcaatcaaggtgtgatggtacatgccttc
tctcagcctgataagagctgtgtgactggagcaattttagagggcgagttcagggaaggg
acatgggttgagtggggtccttcagcctcatcgtttcaacatatcaatgaagagaagaca
attgatttgtcttttgaagcgtctcagaataccattgaaaaaagcattacaaatggaaat
gtaggagttccagacaagataagtaagaaagttggagatgatgtattgccaggaactgac
acttcaaagaggtggctgcgatcatgtttcactaaagctgaaactgttgaatatgagggt
tgcatttggaccaggtttcctcagaaatcatcagttccttgctttgcgaaagttgtttct
tttggcatttttaccagtgatttcccagttctgagattccttagtaaaaagaactcttca
tcaagtggggagggctgccgagagactattagaaatctagaaaatggttcccatgaaaat
gttgagttggatacttctgacgttggttccagcacttcatacaaatgctccagagtgttc
tcttgcaattctcatcatctaattggattctttttaacactcatgaactctgcatctgcc
aatgctagtgatggaagtgaaaaaaggattaagaatataattgtcattgccaggttggat
atttggggaattcagtgggtttctttggtgaagcttccacaaaatgaaaatacatttcca
ctggatgattggaaagacttccacttttctggtgattttcttatttgcctcaatgcttct
ggcttagtgttcttttataacgcagtgtctggtgagcatgttgcacatcttgacatttta
cgggcttgcgagttaaagtgttctgcgaatttgtgtgaaccagaaaggtcaactctagat
gatgctgatatgcaaaacaagtcaaattatcaacatggtgatttattttgtagaagaaca
tttaagaggctacttgttgcgtcatatacacctcttgtggctgtggttgatgaattcaat
atattgtatgtgatatatgctggggactgtctaccggacaagtgttatgcatttgaaaaa
ttgcttccacattatcaacatttaggacttgggatgttagttggttgggatgtagggagt
tcggatgtaagccatcaaaggatatatactggttctccaaattcttgcaatttaaatagg
tcttccaaaatgaatgaaattgtatccttttgtgataatatcggaaacaatattcttcag
aaaatccatggctggaaacgttatggaaatggatgccttcctgattcagtcttgaatggt
ttttcttcaacttcaaaattaatgaatgagaaagttcatgattcaaaaatacatttccac
cttatgcggaagatttttcttcctacagatagatatagtgatgatgactgtatttgtttt
tcttcttttgggattacccggctcattagaaggcagaatatcaaggaccacaagagttct
caaattgtacattttaatttgcacacagattcattagtccacgatgataggttcttgaat
ttgggaagcaaaaaattttctctccaaggaagagaagaagtttctatcggagaagctgtc
ggttgtactttccagggttgtttatatttggtgactgatggtggtctttcggtagttctg
ccttctgtttcagtttcatcaaacctccttcccattgaaacccatggatgtcagcaacca
ggtattgttactggcattggatgtcacccaaaaaatattccgggactggaagagccaaaa
atgttatggtcgccttggaaagttgaaattttggataaagttcttctctatgaaggtcct
gaagaggcagatcgtttatgctttgaaaatggatgggatctgaagttttcacggatgcgt
cggctgcaaattgcattggactacttgaaatatgatgaagtaaagcaatctctggagatg
cttgtaggtgtcaacctggcagaagaaggtgttttaagattgctttttgctgcagtttat
cgtatgtttgggaaaaatggcaatgataatgaggtttctgctgcatcaaggctacttaaa
ttagccacctggtttgctaccaaaatgatccgtgaatatggtttaaaccagcttaaaagg
gatgcattcatgtttcagggcttagataggccccgcgtccttgctcttccttcaatatta
cctgataagacacaaaatgaagtaggaacttccacaagacttcgggagatggctcatttt
ttggagattattcgtaatctgcaatatcaacttagagcaaaacttaaaaagccaggccaa
ggactggtggatcggaaggagcaattaagtatggtagatccaagtttccttcggggtgaa
tttcagttttcaacaccttcagtggattggctggaaacattgaatgaacatgagcatcag
attcctgcattggcattcccacccaacaataatgagaagcttgctttggtgcccaagaat
gctataagcactgaagcttatgtggacttagaggatccaagtgaagcaactgcccttatt
ccacgaggaatgggctcagggaaaattcttcctactgaaaatccaaaagagatgattgca
cgttgggaaatagataaactggatttgaaaactgtggtaaaagatgctttactctctgga
cgcctccctttagctgttcttcaactgcatcttcatcgttctagcgaattcacctctgat
gaagagcctcatgataccttcaatgaagttagtgacattggaagagatattgcttatgac
ctatttttgaagggtgaaactgagcttgctatagcaacattacaaaggcttggagaggac
gttgaaatctgcctcaagcagttgttatttggcacagtgaggaaaacactccgtgtacaa
attgctgaggagatgaagagatacggttacctgggatcagttgagtggaaagtattggag
agaatatcacttatcgagcggatttatcctagctgtagtttttggaaaacgtttcatggc
catatgaaggaatgcatgcacgtgtcgtcaaccttaaactcaccagagggaattcatttg
tgccttttggacttcttcaacaatttaaaaattgaatgcggtgagattgacggagtcgtt
ttaggtgcatgggcaaatgttaatgaaaattcatctgataatgtgcttgaacaagatgat
gttcgtgctggatactgggttgctgctgctgtgtggtccacagcttgggatcagagaacc
tttgatcgtattgtattggatcagccttttgtaatgggtgttcatgtgtcatgggagtca
caattggaatatcacatttaccataatgactgggaggaagtcttcaaactcttggacctt
attcctacatctgttttatcaaatggaagcctccaaatagctttggatgatttccagcct
gcctcaacaattgagtgcagcggatttcctgactttgggaattatatgtactctgttgaa
gaactagatgctgtatgtatggatgttccagatgttaagatttttaggttgtcttccatt
tttatgtgttctacgtggttaaggattttgatagagcaggagcttgtaaagaaattgata
tttttgaaagaatactgggagggcactgcagaggtagcatctcttcttgcacgatcaggc
ttcatcatgaagagatttaagatttcatttgaagacaattccactgggagatcatgggat
ccagatttctcaagcaggaatgaaatatttcgtgcagatactgtgcaagctttggataaa
ttatttattcgttactgtgcacaaaataacttgtcaaatcttctggacctttaccttgat
catcacaagttggttgttgatgacgagtcacttttttcattacaggaagctgctggagat
tgtcattgggcaagatggttgcttttgtcaaggtttaagggtcatgaatatgatgcatct
tttgaaaatgctcgctcaataatgtctcgtaatttgattcatgatggaagcctccatggt
cacgaagtagatgaaataattcatactattgatgatatcgcagaggggggtggagagatg
gcagcattagcaactctaatgtatgcttctgctccaatcccaaattgcttaattagtgga
agtgttaataggcataacagctccacagcacaatgcacattagaaaatctgagacctact
ttgcagcactatcctacattatggcgcacacttgtttctggatgttttggacaagataca
tcttttggtttcttgcgtaccggtgcaaaaaatgctttagcagaatacctaaattggcgt
gacaacattttcttctctactggacgtgatacatcactactacagatgctgcctttctgg
ttccctaaagctgtacggcgattgatccagctttatgtgcagggtccccttggatggcaa
tcattttcaggtttgcctactggagaatctttgttggatagagacattgatttttacata
aatgctgatgaacaagctgagattaatgctatctcctgggaagaaactatacaaaagcat
gttgaggaggaactttatcactcttcactcaaggaaactggacttgggcttgaacatcat
ttgcatcgtggacgtgcgcttgcggcttttaattatcttcttatttcaagagttgaaaag
ttgaaaatggaagggagatccaatgcttctggacaaacaaatgttcaatctgatgtccag
actcttcttgcacctatatctgagaaggaagagtgttttctttcatctgtcatgcccttt
gctattacccattttgaagacaatgtgttggtggcatcatgttcgtttcttttagagctt
tgtggcttatcagccagcatggtccaagtagatgtagcttcattgagacggatatctttc
ttttacaaatccattcaacataaagagaattctaggcaactttcttctaagggttcagca
tttcatgctgcaacacatgatgatagtattatggagtctctagctcaagcattggctgat
gaatgtatgcatggggataactctaagcaaaggggatctcttatttcagtttctagtaaa
cagcattctcgagctcttatgcttgtcctacagcatttagagaaggctagtcttacacaa
ttagtggagggaaaaacatgtggattttggctgttaaccggtaacggtgatggcactgaa
ttgagatctcaacaaaaagctgctagtcagtattggagcttggtaactctcttctgtcag
atacatcagctgccattgagtacaaaatatcttgctgtattagcaagagataatgactgg
gttggatttttgtgcgaagctcagattggaggatactcatttgacacagtgttccaagtt
gcatcgaaggatttcagcgatccccgtcttaagattcacatactaacagttttgaaaagc
atgcaatcaaagaaaatggctagctcacaatcagacctggataagaagagtgaaagtccc
ttcccagaggaaaatgtatatatacccatagaactctttagagttttagcagattgcgag
aagcagaaaacccctggcgaggcattattgctaaaagcaaaagacttctcctggtctatt
ttggccatgattgcatcatgctttccagatgtgtctccactgtcatgcttaacagtttgg
ctggaaataactgcagccagggaaactaaattcatcaaggtgaatgacatagctagccag
atagcagataatgttgcagcagctgtagaagctaccaattccttgtcatgtggcagcaga
tcactttcatttcattacaataggcggaatacaaaacgaaggaggcttttggaatcttta
tgtaggactccctttcctggggcatctgatagttcaactagaatattttctgccgtgggc
agtactgctggagaagagaaaaaggttgaactcggtgaacagattatcgtttcaagtgat
tttaatgaaggtccagcttccctggccaagatggttgctgttctttgtgaacagcgcttg
tttctgcctttactaagagcatttgaattgttcctcccctcttgttctttcttgccattt
atccgggctcttcaggcgttttcacaaatgcgtctgtctgaagcttcagcacatcttgct
tccttttctgctagaatcaaggaagaaccaagtcatttacagacaaataatggaagagaa
gggcagattggaatctcatggattagttccgctgctataaaagctgctgatgctacaatt
tcaacttgtccatctccttatgaaaaaaggtgcttactgcaacttcttgctgctgctgac
tttggagacggaggctctgcgactgctcactatcgacaactttattggaaaattaatcta
gcagagccttctttgcgtaaaaatgatgatctgcaccttgggaatgaaactcttgatgat
gcttccctcctaacagcactggaagagaacaggcagtgggagcaagcacgcaactgggcg
aggcagttggaggctagtggtggaccttggaaatctacttttcaccaagtcaccgaaact
cagtctgaatccatggtagctgaatggaaagaattcctttgggatgtccctgaagagaga
gttgctttatggggtcactgtcagactttattcatcagatattcctatcctgctttacag
gcaggattgtttttccttaagcatgcagaagcagtggagaaagatcttccagctagagag
cttcatgaaatgttgttgctttctcttcaatggttaagtgggatgataaccaagtccaac
ccagtttatcctttacatcttctgcgagaaattgagactagagtatggcttttagccgta
gaatctgaagctcaagggaaaagtgaaggggagatcagtttaacaggttctagccagaat
cctctgacaaggaacatttccaacattattgatcgaactgctagcataataactaagatg
gacaatcatattaattcaatgaagaatgtaactgtggagaaatatgatgctagggagcca
ctccaaagaaaccaagcattagactcaagctcttctactgtgacaattaggagttcaaag
acaaaacgaagggccaaaggctatgcatcatcaagaaggccaatggtggacctagtggat
aaaggctctgagcctgaagatggttccaatcctcccaaacctagaaatgatctccaattg
caagatgaaagcttaaaaattgaaatatcattctctaagtgggaggagaggattgggcct
ggagagctagaaagggctgttgtgtccttactggagtttggacagatatcggctgccaag
caactccaacagaagctgtcaccaggacagatgccttctgaattcatactcgttgatgct
gctttgaaacttgctgcaatgtccactcctaccagccaaataccaatagaaatgcttgat
gaggaacttttttctgttattcagtcatataaaccaatcaaccagcatctcatataccca
ctgcaggtgttggagactttagcaactgttttcactgaaggtagtggacgtggattatgc
aagagaataatagctgtagtcaaagcttcaaatgtattgggtctttcattttcagaggca
tttgacaaacaagctattgaattactacagctactttctcttaaagcacaagagtctttt
gaggaagcaaatctccttgtgcgaactcatgtaatgcctgctgctagtatcgctcaaatt
cttgcagagtcctttctaaagggtctgttggctgctcatcgtgggggatatatggattct
cagaaagaggaagggccagctcctcttttgtggagattttcagatttcttgaagtgggct
gagctgtgtccttctgaacctgaagttggccatgcattaatgcgattagtgattaccgga
caagaaataccgcttgcctgtgaggttgagcttcttattctttcacaccatttctacaaa
tcatcagaatgccttgatggggttgatgttcttgtagcccttgctgctaccagggttgaa
gcttatgtttctgagggtgattttgcatgtttggctcgcttgataactggagtcggaaac
ttctatgaccttaatttcattcttggtattctcatagaaaatggtcaattaggtctactt
cttcagaagtattctgctgcggcaaacacaactgctgccactgttgaggctgacagagga
tttcgaatggcggttctgacatcattgaatcattttaacccttacgaccttgatgcattt
gctatggtatataatcactttgacatgaagcatgaaacagcatctctattggagtcacga
gcggagcaagcttccctgcaatggtttgaatgctatgatagagatcagaatgaagatctc
ctggaatcgatgcgctattacattgaagctgctgaagttcactcttcaattgatgctggc
aacaaaacacgaagggcttgtgcccaagcttcccttgtctcccttcaaatacgaattcca
gattctaagtggctccacctgtctgaaaccaatgctaggcgagcgctagttgagcaatct
cgattcctggaggctctaattgttgcagaagcctacggtcttaatcagccgacagaatgg
gccctagtcctttggaatcagatgctcaatccagaactgacagaaatgtttgtggctgaa
ttcgtggccgtgcttcctcttcaaccatctatgcttattgaactggcaagattctacagg
gctgaggtagctgccagaggtgatcagtcccaattctcagtttggctcactggtggaggg
ttacctgcagaatgggccaagtaccttgggagatcatttagaagcttgttgaagaggact
agggatctgctgctacggttgcagctggcaacttcagcgactgggtttaccgatgtggtg
gatgcctgcatgagggccttggatcgggtccctgacactgcagcaccacttgttttaagg
aaaggacacggtggggcttacctcccactgatgtga
DBGET
integrated database retrieval system
