Hibiscus syriacus (Rose-of-Sharon): 120130918
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Entry
120130918 CDS
T09559
Name
(RefSeq) LOW QUALITY PROTEIN: protein VACUOLELESS1-like
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120130918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsyr04131
]
120130918
Membrane trafficking [BR:
hsyr04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
120130918
Hops complex
120130918
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
WD40_WDHD1_1st
ANAPC4_WD40
WDR55
Beta-prop_EML_2
Motif
Other DBs
NCBI-GeneID:
120130918
NCBI-ProteinID:
XP_039003997
LinkDB
All DBs
Position
Unknown
AA seq
844 aa
AA seq
DB search
MTNVSVAAEWQLLYNRYYRKPELYPIRWKNIDLSRNKVACAPFGGPIAVIRDDSKIVQLY
SESALRKLRIFTSSGVLISDIVWKNPGGRLIGMSWTEDQTLICIVQDGTVYRYNIHAELI
EPNVTLGKECFEQNVVESVFWGNGVVCLTEGGLLFCIPDFKVTSPCQLAETGAEDLPNCM
AVIEPKYTVSGNVEVLVGIGDGILIVDEDGVQRVEGEMVQGPVQKMVVSWDGKYLAIFTH
DGRILVTDINFKGILLEYNCESALPPEQLAWCGLDSVLLYWDDTPLLMVGPRGDPVHYFY
DEPLLLIPECDGVRILSNTSLEFLQRVPDSTVTIFKIGSTSPAALLYDALDHFDRRSAKA
DENLRLIQKSLPEAVEACIDAAGHEFDVSRQRTLLRAASYGQAFCSNFQRDRIQEMCKTL
RVLNAVRDPEIGIPLSIKQYKLLTPSVLIARLINAHRHLLALRISEYIGMNQEVVIMHWA
CSKITASLAIPDATLLEILLDKLKLCRGISYAAVAAHADKNGRRKLAAMLVEHEPRSSKQ
VPLLLSIGEEDTALMKATESGDTDLVYLVLFHIWQKRQPLEFFGMIQARPLPRDLFISYA
RCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASKGSPLHGPRIKLIDKAQNLFA
ETKEHTFESKAAEDTSECCRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKN
EFKVSEKRWYWLKVFALATIRDWEALEKFSKEKRPPIGYRPFVEACVDADEKGEALKYIP
KLADLRERAEAYARIGMAKEAADAASQAKDGELLGRLKLTFQQNAAASSLFDTLRDRLSF
PSVS
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgactaatgtttcagtagctgcagaatggcagctcctctacaaccgctactaccgtaaa
cctgaactctaccctattagatggaagaacattgacttatcccgcaacaaggtcgcctgt
gctccctttggtggtccgatcgccgtgatccgtgacgattccaagatcgtccaactctat
tccgaatcagctctccggaagcttcgcatcttcacttcctccggcgtcctaatctctgat
atcgtatggaagaaccccggcggacgcttgatcggcatgtcgtggaccgaagaccaaacc
ctaatctgcatcgtccaggacggcaccgtttatcgctacaacatccacgccgagctgatc
gaacccaacgtaacgcttgggaaagagtgtttcgagcagaatgtggtggaaagcgtgttt
tggggcaacggggttgtgtgcttgacggaagggggcttgttgttttgcatccccgatttt
aaggtgacgagtccatgccagctggcggagacaggggcggaggatttgcccaattgcatg
gccgttatcgagccaaaatacacggtttctgggaatgtggaggtgttggtcgggattggt
gatggtattttgattgtcgatgaagatggtgtacagagagtggaaggggagatggttcag
ggtccggttcagaaaatggtcgtttcttgggatggcaaatatttggccatttttacacat
gatgggcggatattggtgacggatattaatttcaagggaattctgttggagtataactgc
gagtcagctcttcctccagagcagctagcctggtgtggactggatagtgtacttctttat
tgggatgatacaccgttattgatggtgggccctcggggagatccagtgcattacttttat
gatgagccactgcttttgatcccagagtgtgatggagtgaggattttatcaaacacaagt
ttggagtttctgcaacgggttccagattccactgtaactatattcaaaattggtagcaca
tcacctgctgcattgctttatgatgccttggatcattttgacaggagaagtgcaaaggca
gatgaaaatttgagattgattcaaaaatccttgcctgaggctgttgaagcctgcattgat
gctgctggtcatgaatttgatgtttctcgtcaaagaactctattaagagctgcaagctat
ggacaagccttttgcagcaattttcaacgtgatcgtattcaagagatgtgtaaaactttg
cgggtcttaaatgctgtgcgtgatcctgagattggcatccctctcagtattaagcaatac
aagttgctgacaccatctgtgctgattgctcgattgattaatgctcatcgccaccttctt
gcactgcgaatatcagagtacattggaatgaatcaagaggtggtgataatgcattgggca
tgctcaaagataacagcttcgttagcaattccagatgcaactctcttagaaattctactt
gataagctaaaattatgtagaggtatatcatatgcagcagttgctgctcatgcagataag
aatggccggcgaaagttagctgctatgcttgttgagcatgaacctcgctcttctaaacag
gtgccacttttgttaagcataggagaagaagatactgctttgatgaaggcaacggaaagc
ggtgacactgaccttgtctatcttgttctcttccatatctggcaaaagaggcaaccgttg
gagttctttggaatgattcaggctagacccctgccacgtgatttgtttatatcttatgca
cggtgctataagcatgaatttttgaaagatttctttctatctaccggacaactccaagaa
gttgcatttcttttgtggaaagaatcatgggaactaggaaaaaatccaatggcaagcaaa
ggatccccacttcatggtccccgcataaaactaattgacaaggcacagaatcttttcgct
gaaaccaaggaacataccttcgaatccaaggctgctgaggatacttctgaatgttgcaga
atacagcatgagttggaagtaagtacaaagcaggccatatttgttgattcaagtatcagt
gatactatacgtacatgtattgttctagggaatcatcgagctgcaatgaaagtgaagaat
gagttcaaggtttctgagaagagatggtattggcttaaagtttttgctttggctacaatt
agagattgggaagctctcgagaagttttcaaaagagaagagaccaccaattggttacagg
ccatttgttgaggcctgcgttgatgctgatgagaaaggtgaagctctgaaatatattcca
aaacttgctgatctccgagaaagggctgaggcatatgctcggattggcatggccaaagaa
gctgctgatgcagcatctcaagccaaagatggtgaattgctagggaggttgaaactaaca
tttcaacaaaatgcggcagcttcctcactttttgacacacttcgggatcgattgtctttc
ccaagcgtttcatag
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integrated database retrieval system
