Hibiscus syriacus (Rose-of-Sharon): 120130919
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Entry
120130919 CDS
T09559
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120130919
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120130919
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120130919
mRNA degradation factors
5'-3' decay
Decapping complex
120130919
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
120130919
NCBI-ProteinID:
XP_039003998
LinkDB
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Position
Unknown
AA seq
841 aa
AA seq
DB search
MERSSGKIPSNFSQISSDNAFFDASQYEFFGQNSMEEAVLGVLEDGEEEAPMFASIEDDE
YHLFDRGEVGGLGSLSDMDDLASTFAKLNRVVTGPRNPGVIGDRSGSFSRESSSANDWAQ
DGEFLNWMDQHMFDTEDAEEGKRWSSQPQSSSAHFSESKPLYRTSSYPQQQPEPLFMFDT
DDGQEGKRWSSQPQPSPARFSESKLLYRTLSYPKQQPELHFSSEPIVGPKSSTFTSFPPP
GSRGQQNLPGNLKVPVLTSGSQSPFSAASLSPMSTTSLHLPGLSQGLHFGGNLPQLTSPG
LSFSSRSQNNWVNQSGLLHGERAGLLHHMLQQQIPHLNSLMSPQRQFQEQRLHHAVQPSF
AHFTALQSQLHNSHPSSHKMMFGLADLREHRTKSSQRNRQNMHFSQQSSDTGSQKSGRGV
VQFRSKYMTGEEIESILKIQHAATHSNDPYVDDYYHQACLAKRSSASRAKHQFFPSRKKE
SHSRSRNSGDQHLHLHMDGHGKVSLSSIRRPLTLLEVDPPLGSGVGSDQKTERALEQEPM
LAARITIEDGFSLLLEIDDIDRLIQFSQPHDGGAQLRWRRQILLEGMATLLQLVDPLGKG
AHAVSCAPEDDIVFLRLVSLAKGRKLITRFLQLLIPGSELIRIACMTIFRHLRFLFGGLS
SDLDAIGTTNGLAKIVSMCVNGMDLRALSACLVAVVCSKEQPPLRPLGSSAGDGASVILK
SVLERATKLLSHPSGSCSMPNYAFWRASFNEFFTLLTKSCVSKYEIIIRSIRNQTQPSTE
VISSEAIRREMPCELLQASLPHTNESQRKFLMDFSQYSVPVNESNLPAGSTSQINSESVR
G
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggaaagatctagcggcaaaattcccagcaacttctctcaaatttcctcagataatgcg
ttttttgatgcttcccagtatgaattttttggtcaaaattctatggaagaagcggttttg
ggagttctggaagatggtgaagaggaagctcctatgtttgcatccattgaagatgatgag
taccatttgtttgacagaggggaggttggaggtttagggtcattatctgatatggatgat
ctggcaagtacttttgcaaagttgaatagggttgtcacaggaccaagaaatccaggagtt
attggtgatagatctggttctttttcaagggaaagttcatctgctaatgactgggctcaa
gatggagagtttttaaactggatggatcagcatatgtttgatacagaagatgctgaagaa
ggcaagagatggtcctcacaaccacaatcatcatctgctcatttttcagaatcaaagcct
ctgtatagaacttcgtcatatccccagcagcaaccagagcctctcttcatgtttgataca
gatgacggtcaagaaggcaagagatggtcttctcagccacaaccatctcctgctcgtttt
tcagaatcaaagcttttgtatagaactttgtcatatcccaagcagcaaccggagcttcac
ttctcaagcgaaccaatcgttggacccaaatcatcaaccttcacatctttccctcctcct
ggtagcagaggccagcagaatttgcctggcaacctaaaagttcctgttcttactagtgga
tctcagtcaccattctctgcagcaagcctgtctccgatgtctaccaccagtcttcatctg
cccggtctatctcagggattacattttggcggtaatttgccccagttaacatctcctggc
ctatcttttagtagcaggtctcaaaataattgggttaaccaatctggtctattgcatgga
gaacgtgctggtcttttgcatcatatgttgcaacagcaaatacctcatttaaatagccta
atgtcccctcaacggcagtttcaagagcagagactacaccatgctgtgcaaccatctttt
gcacattttactgcattgcaatctcaactgcataattcccatccttcatcacacaaaatg
atgtttggactggctgatcttagggaacatcgaactaaatcatcacaaagaaacaggcag
aacatgcatttttctcagcaaagttcagatactggtagccagaaaagtgggagaggagtg
gtgcaattcagatccaagtatatgactggtgaagagatagagagcattctcaagatacag
catgccgcgacgcatagtaatgacccttatgtagatgattattaccaccaagcttgtctt
gctaaacgatcttctgcatccagggctaaacatcaatttttcccatctcgcaagaaagaa
tcacattctcgatcccgtaacagcggggatcagcatttgcatctccatatggatggacat
gggaaagtatccctctcttccattcgtagaccccttactctgcttgaagttgatcctccc
ttaggttcaggtgttggttctgatcagaaaactgagagggctctagagcaggaacctatg
cttgcagctagaatcaccattgaagatggtttcagtcttcttcttgaaatagatgatatt
gaccggctcatacaatttagtcaaccccatgatggtggggctcagctcagatggaggcgg
cagatcctgcttgaaggcatggcgacattacttcagcttgttgatccacttggaaaaggt
gcacatgcagttagctgcgctcctgaagatgacattgttttcttaagattagtctctctt
gcaaaaggccggaagcttatcactaggttccttcagcttctcatccctgggagtgagctt
atacggatagcatgcatgaccattttccgtcacttgaggttcttgtttggtggtctttct
tcggatctggatgcaatagggacaacaaatggccttgcaaagattgtttccatgtgtgtt
aatggaatggatcttcgtgcacttagtgcatgccttgttgcagttgtttgttctaaagag
cagcctccacttaggccccttggaagctctgctggggatggtgcgtctgttattttaaaa
tcagttcttgaaagggccactaaacttctaagccatccttctggaagttgcagcatgcct
aattatgctttctggagagcttcgtttaatgaatttttcacccttcttaccaagtcttgt
gtgagtaaatacgagataatcatccgatcgatacgaaaccaaactcagccatccacagaa
gtaatcagttcagaggctataaggcgtgaaatgccttgcgagcttctacaagccagtctt
cctcacacaaatgagtcccaaaggaagtttttgatggacttttctcagtattctgtgcct
gtgaatgaatccaatttgcctgccgggagtactagccaaatcaactccgaatcggtaagg
ggataa
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