Hibiscus syriacus (Rose-of-Sharon): 120132197
Help
Entry
120132197 CDS
T09559
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03013
Nucleocytoplasmic transport
hsyr03015
mRNA surveillance pathway
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120132197
09122 Translation
03013 Nucleocytoplasmic transport
120132197
03015 mRNA surveillance pathway
120132197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120132197
03041 Spliceosome [BR:
hsyr03041
]
120132197
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120132197
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120132197
Spliceosome [BR:
hsyr03041
]
Complex C
Other components
EJC/TREX
120132197
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120132197
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
120132197
NCBI-ProteinID:
XP_039004942
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MGETRDNDAYEEELLDYEEEEEKAPDSVTAKVNGEGAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIEPSPGQVIALV
LCHTRELAYQICHEFERFSTYLPEIKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILA
LTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQDERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacgagggacaacgatgcctacgaagaggagcttctcgactacgaggaggaa
gaagagaaagcacccgactctgtaactgctaaagtcaatggcgagggagccaagaaggga
tatgttggcatacacagttcaggattcagagacttccttttgaaaccagagcttctccgg
gctattgttgattctggatttgagcacccttcagaagtgcaacatgaatgcattccccaa
gctatattgggtatggatgtcatttgccaagctaaatcagggatgggaaagaccgcagtt
tttgttctgtcaagcctacagcaaattgaacctagtccaggacaagttattgcccttgtt
ttatgtcatacgagggaattagcttaccagatttgtcatgagttcgagaggttcagtact
tatttgcctgagatcaaggttgctgtcttctatggaggtgtcaacatcaaagttcacaaa
gatctattgaaaaatgaatgcccccacattgttgttgggacacctggaaggatattggct
ctgacaagagataaagatctttctctgaagaatgtgaggcatttcattctcgatgaatgt
gacaagatgcttgaatcacttgacatgaggagagatgtgcaggagatattcaaaatgacc
cctcatgataaacaagttatgatgttttctgccactctcagcaaagaaattcgcccggtt
tgcaagaaatttatgcaagatcccatggaaatttatgtggatgacgaggccaagttgacc
cttcatggtcttgtacagcattacatcaaattgagtgagatggagaaaaatcgcaagttg
aatgacctccttgatgcattggacttcaatcaagttgttatctttgtcaaaagtgtgagc
agagcagctgagttgaacaaattacttgtggagtgcaactttccttctatatgcattcac
tctggcatgtcccaggatgaaaggttgactcgctacaagggtttcaaggaggggcataaa
agaattcttgtagctacagatttggttggaaggggaattgacattgaacgagttaacatt
gtcatcaactatgacatgcccgattctgctgatacatacttgcacagggttggtagagct
ggtagatttggcaccaagggtcttgcaattacattcgtttcatctgcttcagattctgac
gtgctcaaccaggtccaagagaggtttgaggtggatataaaggagcttcctgagcaaatt
gatacatctacttacatgccatcataa
DBGET
integrated database retrieval system
