Hibiscus syriacus (Rose-of-Sharon): 120133168
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Entry
120133168 CDS
T09559
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein-sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120133168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsyr04131
]
120133168
Membrane trafficking [BR:
hsyr04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
120133168
Hops complex
120133168
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS11_N
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_C
Clathrin
zf-C3H2C3
TPR_Vps41
zf-C3HC4_2
zf_RING_Vps8_fungal
zf-RING_5
zf-RING_6
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
120133168
NCBI-ProteinID:
XP_039005749
LinkDB
All DBs
Position
Unknown
AA seq
952 aa
AA seq
DB search
MYQWRKFEFFEEKLGGKCKIPDEITGKIQCASSGRGKLVIGCDDGTVSLLDRGLNFNFAF
QAHTFSALFLQMLKQRNFLVSIGEDEQISPQQLGMCLKVFDLDKMQPEGSSTTSPDCIGI
LRIFTNQFPQAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDSAS
VDGNSYVTGLGFRVDGQALLLFAVTPNSVSLFSMQSQPPRRQTLDQIGCDVNSVAMSDRS
ELIIGRPEAVYFYEIDGRGPCWAFEGEKKFLGWYRGYLLCVIADXRNGKNTFNIYDLKNK
LIAHSLVVKEVSHMLCEWGNIILIMTDKSALCIGEKDMESKLDMLFKKNLYTVAINIVQT
QQADASATAEVLRKYGDHLYSKQDYDEAMAQYIHTIGHLEPSYVIQKFLDAQRIYNLTNY
LEXLHEKGFASKDHTTLLLNCYTKLKDVEKLNVFIKSEDGVGEHKFDVETAIRVCRAANY
HEHAMYVAKKAGRHEWYLKILLEDLGRYDEALQYISSLEPSQAGVTVKEYGKILVEHKPA
ETINILMRLCTEDKELAKLGTSNGGYLSMLPSPVDFLNIFIHHPQSLMDFLEKYADKVKD
SPAQVEIHNTLLELYLSIDLNFPSISQANNGTDFSVKERTVSNGKLVAEGKNSSTEKDTL
ERREKGLRLLKSAWPSELEHPLYDVDLAIILCEMNAFREGLLYLYEKLKLFKEVIACYMQ
AHDHEGLIACCKRLGDSGKGGDPALWADLLKYFGELGEDCSKEVKEVLTYIERDDILPPI
IVLQTLSRNPCLTLSVIKDYIARKLEHESKLIEEDRRAIEKYQEDTMAMRKEIQDLRTNA
RIFQLSKCTACTFTLDLPAVHFMCMHSFHQRCLGDNEKECPECAPEYRSVMEMKRSLEQN
SKDQDRFFQQVKSSKDGFSVIAEYFGKGVISKTSNGPTGTARSDSISSGSGF
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgtatcagtggaggaaattcgagttctttgaggagaaattaggaggaaaatgcaaaatc
ccagacgaaatcactggaaaaatacagtgcgcctccagcggaagaggaaagctggtgatc
ggttgcgatgacggcactgtaagcctcctggatcgcggtcttaacttcaattttgccttt
caagctcatactttctccgctctgttcctccaaatgctcaagcaacggaatttcttggtg
agtattggagaagatgaacaaatatcgccacagcaattggggatgtgcttgaaggtattt
gatcttgataaaatgcagccggaaggatcgagtaccactagtcctgattgtattggaatt
ttgcgtattttcaccaatcaatttcctcaagctaagatcacatcatttttagtcttggag
gaagctccgccgatattacttatagctattgggttagacaatggttgcatttactgtatc
aagggagatattgcacgtgaaagaataacccgtttcaagcttcaggttgatagtgcatct
gtagatgggaattcatacgttactggactaggttttagagtggatggtcaagcccttcta
ttgtttgctgtgactccaaattctgtgagtttgttcagcatgcagagccaacctcctagg
cggcaaacattagatcagatcggatgcgatgttaatagtgtcgccatgagtgaccgctcg
gagttgataattggtcgacctgaagccgtgtatttctatgagatagatgggcgtggtcct
tgttgggcttttgaaggagagaagaagttcttagggtggtaccgtggatatttattatgt
gttattgcagatncaagaaatggaaagaacacatttaatatttatgacctgaagaacaag
ttaattgcgcacagtctagttgttaaagaagtttctcacatgctttgtgaatggggtaat
ataatacttataatgactgataaatcagctttgtgtattggtgagaaggatatggaaagc
aagttagatatgctgttcaagaaaaacctttacactgtagctatcaacattgttcaaact
caacaagctgatgcttctgcaactgctgaagtactgaggaagtatggcgatcatctatat
agcaaacaagactatgatgaggctatggcacagtacatccacaccattggtcatcttgaa
ccttcctatgtaatccaaaagtttctggatgcacaaagaatctacaaccttacaaattac
ttagaanatttacatgagaagggctttgcctctaaagatcacaccacccttctgttaaac
tgctatactaaattgaaagatgttgaaaagttgaatgtgttcattaagagtgaggatggt
gttggggaacataagtttgacgtggagactgctataagggtttgccgagcagcaaattac
catgagcatgccatgtatgttgcaaagaaggcagggcggcatgaatggtacttaaagatt
ttgcttgaagaccttggcagatatgatgaagctttgcaatatatctctagccttgaacca
agtcaagctggggtgacagtgaaggaatatgggaagattctcgtagagcacaaaccagca
gagacaattaatatactcatgaggctgtgcactgaggataaggaattggctaagcttgga
acatcaaatggtggttacttatctatgttaccatctcctgttgatttcctcaacattttc
atccatcatccacaatctcttatggattttcttgaaaaatatgctgacaaggtaaaagat
tctcctgctcaagttgagattcataacacactcttggagttgtacttgtccattgatttg
aacttcccatcaatctcccaagctaacaatggaacagattttagtgttaaagaaagaaca
gtgtccaatgggaagttagttgctgagggtaagaattcttctacagaaaaggacacactg
gaaagacgggaaaaggggctacgcttgcttaagagtgcatggccttctgaactggaacat
ccactttatgatgttgatctcgctatcatcctatgcgagatgaatgcatttagagaaggg
ttattgtatctctatgagaagttgaaactttttaaagaagtgattgcttgctacatgcaa
gcccatgaccatgagggattgattgcatgttgcaaaaggctaggggactctggtaaggga
ggggatcctgctctttgggcggatcttctaaagtattttggtgaacttggggaagattgc
tctaaagaagtgaaggaagtattaacatatattgagagggatgacatcttgccccctata
attgttcttcagacactttctaggaacccttgtctcacattatctgttattaaagattat
attgcccggaaacttgaacatgagtcaaaactgattgaagaggacaggcgagctatagag
aagtatcaggaagacacaatggctatgagaaaagaaattcaggacctgaggacaaatgct
aggatatttcagctgagcaagtgcactgcttgcacttttacccttgacctacctgctgtc
cacttcatgtgtatgcactcatttcatcagcgctgccttggtgataatgaaaaggaatgt
cctgagtgtgctccagagtacaggtctgtaatggaaatgaagagaagcttggaacagaat
tcaaaagatcaagatcgattcttccaacaagtcaagagctcaaaggacggattttccgta
attgctgaatattttgggaagggggttattagcaaaactagtaatggtcccacaggaact
gctagatctgacagcatctcttccggcagtggcttctga
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