Hibiscus syriacus (Rose-of-Sharon): 120133385
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Entry
120133385 CDS
T09559
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120133385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120133385
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120133385
mRNA degradation factors
5'-3' decay
Decapping complex
120133385
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3689
Motif
Other DBs
NCBI-GeneID:
120133385
NCBI-ProteinID:
XP_039005911
LinkDB
All DBs
Position
Unknown
AA seq
779 aa
AA seq
DB search
MDRSDGKLYNNFSSLSSPGNAVFDASQYEFFCQNDTEEVELGGLEGDEENDPVFASTEDD
EYHFDKGEVLGLGSPSDMDDLASTFAKLNRVVTGPRNPGVIGDRSGSFSRESSSAADWAQ
DGDYAYWIDQHIFYAEDAQEGKRWSSQPQTSALLTDSKPLYRTSSYPEKQPMLHRFSSEP
IFGPKSNFTSFPAPGSGSQPPFSTASLSPMFNSGLHLAGLSHGLHGGGNMSQLTSPGLSF
SNRSHNHWVNHSGLLHGDHAGLLHNMLQQQIPHHNGLISPQLMSPQQQRLHHSIQPSIAH
FASLQSQLYDAHPSHKLMLGQTDLRDQRTKSSQRKRQSMRISQQNSDAGSQKSESGLVQF
RAKHMSAEEIESILKMQHAATRSNDPYVDDYYHQACLAKRSFGSRGKHHFFPSHLKDWHS
RSCNSGEQHLHLHVDALGRVPLSSIRRPHPLLEVDPPFGSGDGGSEQIMEKPLEEEPMLA
ARITIEDCLCLLLDIDDNDRLIQFSPPQDGGFQLRQRRQILLEGMAASLQLVDPLTNGMP
AVNCAPKGDIVFLRLVSLAKGRKLLSRFLQLLIPGSELIRIVCMAIFRHLRLLFGGLSSD
PEVAETTTNLAMTVSTCVNAMDLHALSACVVAVVCSSEQPPLRPLGSPAGDCASIILKSV
LERATQILSYPSGNCSMPNYALWRESFDEFFTLLTEHCMNKYEMIKQSMQNESLPTTEGI
ASEVIRQEMPCELLFASLPHTNEAQRMLLVDFFQCFVPMNGTNSHAGSTSQINSESVRG
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggatcgatccgatggcaaactttacaacaatttctcctctctatcttccccaggtaat
gcggtttttgatgcatctcagtatgaatttttttgtcaaaatgatacggaagaagtggag
ctggggggcctggaaggtgatgaagagaatgatcctgtctttgcttccactgaagatgat
gaataccattttgataagggagaggttttaggtttaggttctccatctgatatggatgat
ctagctagtacttttgcgaagttgaatagagttgttaccgggcccagaaatccaggagtt
attggtgatagatctggctctttttcaagggaaagttcctccgctgctgactgggctcaa
gacggagattatgcatactggatcgatcagcatattttttatgcagaagatgctcaagaa
ggcaagagatggtcatcacagccacaaacttctgctcttcttacagattcaaagcctttg
tatagaacttcctcgtatcctgagaagcagcccatgctgcatcgcttctcaagtgaacca
atttttggaccaaaatcaaacttcacgtctttccccgctccaggaagtggatcccagcca
cccttctctacggcaagtctctcgcccatgttcaattctggtcttcatctggctggttta
tctcatggattgcatggtggtggtaacatgtcccagttaacatctcctggcctatctttt
agtaacaggtcacataatcactgggttaaccactctggcctattacatggtgatcatgct
ggtcttttgcataatatgttgcaacagcaaatacctcatcacaatggcctaatttcccca
cagttaatgtcaccacaacaacagagattgcaccattcaattcaaccatctatagctcat
tttgcatcattgcaatctcaactgtatgatgcccatccttcacataaacttatgcttgga
caaactgatcttagggatcaacgaactaaatcatcccaaagaaaacggcagagcatgcgt
atttctcagcaaaactctgatgctggtagtcagaaaagcgagagtgggttggtgcaattc
agagccaagcatatgtctgctgaagagatagagagtatcctgaagatgcagcatgctgcc
acacgtagtaatgatccttatgtagatgattattaccaccaagcttgtcttgccaaaaga
tctttcggatccaggggtaaacatcatttttttccatctcacctgaaggactggcattct
cggtcctgtaacagtggagagcaacatttgcatctacatgttgatgcacttgggagggta
cccctttcttccattcgaagacctcatcccctgcttgaagttgatcctccctttggttca
ggtgatggaggttctgaacagataatggagaagcctctagaggaggaacctatgcttgca
gctagaatcaccattgaagattgtctctgtcttcttcttgatatagatgataatgacagg
ctcatacaattcagtccaccccaagatggtgggttccagctcagacagaggcggcagatc
ctgcttgaaggtatggcagcgtcactgcagcttgttgatccacttaccaacggtatgcct
gcagttaattgtgctccaaagggtgacattgtgttcctaagattagtctctcttgcaaag
ggtcgtaagctgctctccaggttccttcagcttctcatacctggaagtgagcttattcga
atagtgtgcatggcgattttccgtcacttgagattattgtttgggggtctttcttctgat
cccgaagtagccgagacaactactaatcttgcgatgactgtttcgacatgtgttaatgct
atggatcttcatgctctcagcgcatgtgttgtagctgttgtttgttcttcggagcagcca
ccacttaggcccctcggaagtcctgctggagattgtgcttctatcattttaaaatcagtt
cttgaaagggcaactcaaattttaagttatccttcaggaaattgcagcatgcctaattat
gctttgtggagggagtcgtttgatgaatttttcactcttcttaccgagcattgcatgaat
aaatatgaaatgataaagcaatcaatgcagaacgaatctctgccaacaacagaagggatt
gcttcagaggttataaggcaagaaatgccttgcgagcttctatttgctagtcttcctcac
acaaatgaagcccaaaggatgcttttagtggacttctttcagtgttttgtacccatgaat
ggaaccaattcccatgctggaagtaccagccaaataaattcggaatcagtgaggggttaa
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