KEGG T09559: 120134225

Hibiscus syriacus (Rose-of-Sharon): 120134225

Entry

120134225         CDS       T09559

Name

(RefSeq) probable CCR4-associated factor 1 homolog 11

K12581

CCR4-NOT transcription complex subunit 7/8

Organism

hsyr Hibiscus syriacus (Rose-of-Sharon)

Pathway

hsyr03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:hsyr00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    120134225
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hsyr03019]
    120134225
Messenger RNA biogenesis [BR:hsyr03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     120134225
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     120134225

SSDB

Motif

Pfam:

CAF1 DUF5083

Other DBs

NCBI-GeneID:

120134225

NCBI-ProteinID:

XP_039006631

LinkDB

Position

Unknown

AA seq 247 aa
MELPQKPVIVRQVFRDELEYEFRLIQSVILEYPLVSIDTEYPNTIFKADKEIIALRDEHI
NYQYMKSNIDILDMTQLGLTFSDYEGNLPDFDTPFCYIWEFNFKGFRKNKKKGIDSRDFA
TMFWNLGLFNYFRGLTWMAFHGSYDFGFLVKVLIQQSLPNDLDSFMGLLVSLLGDKIFDV
KHNLKCFGLLGSLDKVARELNVVRLTGLSHQAGSDSLLTLQCFTELRKLNAFEGFQVLAL
ALYGLQL

NT seq 744 nt +upstreamnt +downstreamnt
atggagcttcctcaaaagccagtgattgttcgacaagtctttcgagatgaattggaatat
gaatttagattaattcaaagtgtgattcttgagtatcctttagtttcaatcgacactgaa
tatcctaatactattttcaaagcagataaagaaatcattgcattaagagacgagcatatc
aattatcagtacatgaaatccaatattgatattttggatatgactcagctaggtttaact
ttttcggactatgaaggtaatctgccagacttcgatacgccgttttgttacatatgggag
ttcaactttaagggtttcagaaagaataaaaagaagggtattgattccagagattttgcc
acgatgttctggaatttggggttgttcaattatttcagaggtttaacgtggatggccttt
catggttcttatgactttggatttctagttaaggttttaattcaacaatcgctaccgaat
gatcttgattcttttatgggactattagtctctcttcttggtgacaaaatatttgatgtc
aaacataatttgaagtgtttcggcttgttgggtagtttggataaagttgcgagagagtta
aatgtggttcgtctaactgggttgagccatcaagcaggatctgattctttactcaccctt
caatgtttcacggagttgagaaaattgaatgcttttgaagggtttcaagtgcttgcactc
gcattgtatgggcttcagttgtag

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