Hibiscus syriacus (Rose-of-Sharon): 120134583
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Entry
120134583 CDS
T09559
Name
(RefSeq) eukaryotic initiation factor 4A-3-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03013
Nucleocytoplasmic transport
hsyr03015
mRNA surveillance pathway
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120134583
09122 Translation
03013 Nucleocytoplasmic transport
120134583
03015 mRNA surveillance pathway
120134583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120134583
03041 Spliceosome [BR:
hsyr03041
]
120134583
03009 Ribosome biogenesis [BR:
hsyr03009
]
120134583
03012 Translation factors [BR:
hsyr03012
]
120134583
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120134583
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120134583
mRNA cycle factors
Stress granule specific factors
120134583
Spliceosome [BR:
hsyr03041
]
Complex C
Other components
EJC/TREX
120134583
Ribosome biogenesis [BR:
hsyr03009
]
Eukaryotic type
90S particles
Helicases
120134583
Translation factors [BR:
hsyr03012
]
Eukaryotic type
Initiation factors
eIF-4
120134583
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
AAA_22
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-GeneID:
120134583
NCBI-ProteinID:
XP_039006953
LinkDB
All DBs
Position
Unknown
AA seq
406 aa
AA seq
DB search
MSAAATTSRATRRMGAEDEKLVFETTEGIEPIMSFDQMGLKDDLLRGIYNYGFEKPSAIQ
QRAVMPIINGRDVIAQAQSGTGKTSMIALTVCQVVDTASREVQALILSPTRELASQTEKV
IRTIGDFMNIQAHACIGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLI
LDESDEMLSRGFKDQIYDVYRHLPPEIQVCLISATLPHEILEMTSKFMTDPIRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVS
SMHGDMPQKERDAIMAEFRDGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRI
GRSGRFGRKGVAINFVKSDDIKVLRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcggcggcgacaactagccgagcaactaggcggatgggagcggaggatgagaag
ttggtgtttgaaacgacggaaggaatcgagccgataatgagcttcgatcagatgggcctt
aaagacgacctcctccgcggaatatacaattacggcttcgagaagccgtcggctatccag
cagagagcggtcatgccgataatcaatggtcgcgatgtgattgcccaagcccagtctggt
accggcaaaacatctatgattgccctcaccgtttgccaagtggtcgacactgcaagtaga
gaggttcaagcgttgatcttgtcacccacaagggaactagcttcacaaaccgagaaagtg
ataaggacaattggtgatttcatgaacatacaagcacacgcttgtattggaggcaaaagt
gtgggtgaagatataagaaagctagaacatggagttcatgtagtgtcgggaactcctggt
agagtttgtgacatgatcaaaaggagaaccctacgtacaagggctattaaactactgatt
ctcgatgaatctgatgagatgctcagcagagggttcaaagatcaaatttatgatgtttac
cgacatcttccaccagagattcaggtttgtttgatatctgctaccctccctcatgaaatc
ttggaaatgacgagcaaatttatgaccgatcctataagaatccttgtgaagcgtgatgaa
ctgactctggagggaatcaagcagttttttgtggcagttgaaagggaggagtggaagttt
gatacactttgtgatctttatgacacgttgactatcactcaagctgttattttctgcaat
acaaaacgaaaggttgattggctaactgagaagatgcgtagcaataactttacagtgtca
tcaatgcatggggatatgcctcagaaggaaagagatgcaattatggccgagtttcgtgat
ggtgcaacccgtgttcttataactacagatgtttgggccagagggcttgatgttcagcag
gtatctttggtgatcaattacgacctgccaaacaatcgagagctttacatccataggatt
ggacgttctggccgttttggtcgaaagggtgttgctattaattttgtgaaaagtgatgac
atcaaggttcttagagacatagagcagtactatagtacccagattgacgaaatgccaatg
aatgttgcggatctgatataa
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