Hibiscus syriacus (Rose-of-Sharon): 120140417
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Entry
120140417 CDS
T09559
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120140417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120140417
03012 Translation factors [BR:
hsyr03012
]
120140417
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120140417
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120140417
Translation factors [BR:
hsyr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120140417
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
ATPase
nSTAND3
T2SSE
AAA_16
Dicer_dimer
AAA_30
ABC_tran
PhoH
Motif
Other DBs
NCBI-GeneID:
120140417
NCBI-ProteinID:
XP_039011331
LinkDB
All DBs
Position
Unknown
AA seq
1203 aa
AA seq
DB search
MSCYSAIFQGYLRTTAMSVRPTSLLLNNTTKTLLKPCLFSFPSSRTHSPGSFRRLHLRNG
FVRCAKSGSAASSSSRALALDWRNISLPYSQHQSSNYGRYAYQDVSGDDSDHEFGSSQSQ
MGVSTLDNFDEWRWKLTLFLRNKDEQEIVSRERKDRRDFEQLSALATEWVTXSSYARVVV
FSKLPLPNYRSDLDDKRPQREVVLPFGLQKDVDLHLKAYLSHKAMSSGSFSDKPLLRSNS
GGRTAADELPIQNPELLVQNTVAMERILRRRSLQLRDKQQEWKESPEGQKMLEFRRSLPA
FKEKDALLNSISQNQVVVVSGETGCGKTTQLPQYILESEVEAGRGASCSIICTQPRRISA
MAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLGDRDLRGVSHVI
VDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLNADLFSSYFGGAPTIHIPGFTYP
VRAHFLENILEIIGYRLTPYNQIDDYGQEKMWKMQRQAQSVKKRKSMLTSAVENVLEDAD
FXGYSLHTRESLSCWNPDSIGFNLIEHVLCHITKKDRPGAVLVFMTGWDDINSLKDQLQA
HPLLGDPSKVLLLACHGSMPSSEQRLIFEKPEDGVRKIVLATNXAETSITINDVVFVVDC
GKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPKCVYDSLSDYQLP
ELLRTPLQSLCLQIKSLELGGITEFLSRALQPPELLSVQNAVEYLKIIGALDENENLTVL
GRNLSMLPVEPKLGKMLILGAIFNCLDPIMTVVAGLSVRDPFLMPFDKKDVSFDISKAQF
SGQKYSDHIALSLAYEGWKEAEKEQSGYEYCWKNFLSAQTLKAIHSLRKQFFYLLKDAGL
VDQNIEICNKWSNDEHLVRAVICAGLFPGXCSVVNKEKSIALKTMEDGQVLLHGNSVNAE
VPKIPYPWLVFNEKVKVNAVFLRDSTGVSDSIMLLFGGNISRGGLDGHLKMLGGYLEFFM
KPALADTYLSLKRELEELVQMKLLNPTLDMHSSNELLSAVRLLVSEDQCEGRFVFGRQLP
ASSKKMATVKTPGKGETDNSKNHLQTVLARAGHGPPVYKTKQLKNNQFRSTVIFNGLDFM
GQPCSNKKLAEKDAAAQALLWLRGEDHSSSRDXDHASLLLKKSKSKRRTSVGDDAKWSTK
VFR
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgttattcagctatttttcagggctatctcaggacaaccgccatgtctgtgcga
cccacttccctcctgctgaacaacaccactaaaacccttttaaaaccttgtttgttttcc
ttcccctcctccagaacccattcccctggttctttccggcgtttgcatttaaggaatgga
ttcgttaggtgcgctaagtctgggtctgccgcttcatcttcttccagggctcttgccttg
gattggaggaatatttccttgccttattcgcagcatcaaagctccaattatggtcgctat
gcttaccaggatgtttccggtgatgactcggaccatgaatttgggtcttcacagtctcaa
atgggtgtttcaacgcttgacaattttgatgaatggagatggaaattaactttatttctt
cgcaacaaagatgagcaagagatagtatctagggagaggaaggacaggcgtgactttgag
caactttcagctctggcaacagaatgggttacatagtcgtcatatgcaagagtggttgtt
tttagtaaacttccgcttccaaactatagatctgaccttgatgataaacgtccacaaaga
gaggtagtcttaccttttggcttacaaaaagatgtagaccttcacctcaaagcttacctt
tctcataaggctatgagcagtggtagtttttctgataagcctttactgagatcaaatagt
ggtggaagaactgctgcagatgaattacctattcagaatccagagctccttgttcagaat
actgttgcaatggagagaattcttcggcggagaagtttgcaactacgtgataagcaacaa
gaatggaaggagtctcctgaaggacaaaagatgcttgaatttcgtagaagcctaccggca
tttaaagagaaagatgcattgctaaattctatctcacagaatcaggtggttgttgtctct
ggtgaaactggttgtggtaaaaccactcaacttcctcagtacatattagaatctgaggtt
gaagctggtcgtggagcttcctgtagtattatatgtactcagcctagaagaatatctgct
atggctgtttctgaaagggttgctgcagaaagaggggagaaattgggagaatctgtcggt
tataaagtacgccttgagggaatgaaagggagagacacccgccttcttttttgtacaact
ggtattttacttaggcgactacttggtgacagagatttgagaggtgtaagtcatgttatt
gttgatgagattcatgaacgtggaatgaatgaagattttcttctcattgtgttgaaagat
ctccttccacgtaggccagagttgaggttgattctgatgagtgcaaccttaaatgctgac
ctcttttcttcttactttgggggtgccccaacaatccatattccaggttttacatatcct
gtacgagcacattttctagagaacattctagagataattgggtacaggttaactccatat
aatcaaattgatgattatggtcaagaaaagatgtggaaaatgcagaggcaggcacaatct
gttaaaaagaggaagagtatgctaacttcggcagttgagaatgtacttgaagatgcggac
ttcnaggggtatagtttacacactcgggaatctttatcctgttggaatcctgactcaatt
ggtttcaatctcattgagcatgttctttgccacataacaaagaaagataggcctggtgct
gttttggttttcatgactggttgggatgacataaattctctaaaagatcagctccaagct
catcctctcctgggggatcctagcaaagtgttgttgcttgcatgccatggttccatgcct
agctctgagcagaggttaatatttgaaaagccagaagatggagtgaggaaaatagttctg
gctactaatnnggctgagaccagcatcaccatcaatgatgtggtttttgtggttgattgt
ggaaaggcaaaagaaacatcctatgatgcactaaataatactccttgtttgcttccatct
tggatatcaaaggctgctgcccggcaaagaagaggaagagctggtcgtgttcaacctggc
gagtgttaccacctctatcccaaatgtgtttatgattctttgtctgattatcaacttcca
gagcttctaaggacaccattacagtctttatgtttgcaaatcaaaagtctagagcttgga
ggtattactgagttcctttctagggcattgcagcctccagaacttctgtcggtacaaaat
gctgttgaatatctgaagattattggagctttagatgagaatgagaacttaacagtgcta
gggcgcaacttgtcaatgcttccggttgagcctaaacttgggaaaatgctgatcttggga
gctattttcaactgtttagatccaataatgactgttgttgctggtctcagcgtcagagat
ccattcctgatgccatttgataagaaggatgtaagttttgacatttcaaaagcccaattc
tccggccagaagtacagtgatcatattgcacttagtctagcctatgagggttggaaagaa
gctgaaaaggagcagtctggttatgagtattgttggaagaattttctttctgcacaaact
cttaaggctattcactctctacgaaagcaattcttctatttgctcaaggatgctggtcta
gttgatcaaaatatagaaatctgcaataagtggagcaatgatgagcatcttgtcagggca
gtcatttgtgctggcttgtttccaggantttgctctgttgtgaacaaagagaagtcaatt
gcactgaaaacaatggaggatggtcaagttcttttacatgggaattcagtgaatgctgaa
gttcccaaaattccatacccttggctggttttcaatgaaaaggtaaaagtgaatgcagtg
ttcctccgtgattcaactggtgtttctgattccataatgctcttatttggagggaacatt
tctagaggtggactagatggacatctaaaaatgttgggaggatatttggagttcttcatg
aaacctgctttagctgatacatatttaagcctgaaaagagagctagaggaactcgttcag
atgaaacttttgaaccctacattagacatgcattcaagcaacgagctcctctctgctgta
agattgctggtctcagaagaccaatgcgaaggtagatttgtctttggccgtcagttgccg
gcatcctcaaagaagatggctacggtaaagacaccaggtaaaggcgagactgataattca
aagaatcatctgcaaacagtgcttgcgagggctggacatggaccacctgtttacaagaca
aaacagctaaagaacaaccagttccgatccacagtgatctttaatgggctggattttatg
gggcagccttgcagcaacaagaagcttgctgaaaaggatgcagctgctcaggctctgctg
tggttgaggggtgaagaccattcatcttccagagatnncgaccatgcatcattgcttctg
aaaaagagcaaaagcaagaggagaacttcagtcggtgatgatgctaagtggagtactaag
gtatttaggtga
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