Hibiscus syriacus (Rose-of-Sharon): 120143526
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Entry
120143526 CDS
T09559
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120143526
09123 Folding, sorting and degradation
03018 RNA degradation
120143526
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120143526
03041 Spliceosome [BR:
hsyr03041
]
120143526
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120143526
mRNA degradation factors
5'-3' decay
Lsm complex
120143526
Spliceosome [BR:
hsyr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120143526
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF7452
Ntox4
Motif
Other DBs
NCBI-GeneID:
120143526
NCBI-ProteinID:
XP_039013761
LinkDB
All DBs
Position
Unknown
AA seq
87 aa
AA seq
DB search
MTNNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
RITKLDQILLNGNNIAILVPGGSPDTE
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacaatccctcgcagcttcttccgtcagagttgatagataggtgcatagggtcc
aaaatatgggtgataatgaaaggcgacaaggaactcgtgggtactctaagaggcttcgat
gtctacgtcaatatggttctcgaagatgtcactgaatatgagatcactgctgaaggaaga
cggatcacaaagcttgatcaaattttacttaatggaaacaacattgccattttggtcccg
ggaggctcacctgatacagaataa
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