Hibiscus syriacus (Rose-of-Sharon): 120145500
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Entry
120145500 CDS
T09559
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120145500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsyr03041
]
120145500
03009 Ribosome biogenesis [BR:
hsyr03009
]
120145500
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120145500
Spliceosome [BR:
hsyr03041
]
Complex A
U1 snRNP components
U1 related factors
120145500
Complex B
120145500
Ribosome biogenesis [BR:
hsyr03009
]
Eukaryotic type
Pre-60S particles
Helicases
120145500
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
Motif
Other DBs
NCBI-GeneID:
120145500
NCBI-ProteinID:
XP_039015258
LinkDB
All DBs
Position
Unknown
AA seq
685 aa
AA seq
DB search
MASTVTASSGPRYAPPDPTLPKPWKGLVDGKTGYLYFWNPVTNVTQYERPTSGDSVPKPS
VTPVSSSVQVQQSSEGCHGYNLGKENDRDEMDSEAISNQNARSGPVHSHNTPNVTSSSVI
GGPSAKGQGSVTGGRNLSGDAYRRQHEITVTGDEVPMPFSSFESTGLPSEILREVHNAGF
SAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLMPGFMHIKQYRKNPQMGPTVLVLSP
TRELATQIQDEAHKFGNSSRISCTCLYGGAPKGPQLREVEKGIDIVVATPGRLNDILEMR
KISLQQVSYLVLDEADRMLDMGFEPQIRKIVKEVPTRRQTLMYTATWPKEVRKIAADLLV
NPVQVNIGNIDELVANKSITQHVEVLSPMVKHKRLEQILRSQEPGSKIIIFCSTKRMCDQ
LARNLSRFGAAAIHGDKSQADRDYVLGQFRSGRTPVLVATDVAARGLDVKDIRWGLEFLL
HGSMALCFYSSRKPKLINSGNTWVVINYDFPTGIEDYVHRIGRTGRAGATGLAFTFFGDQ
DSKHASDLIKILEGANQKVPAELHEMASRGGGMGRPRRWAPSSGGHDGGCGGCTDSGCGG
RDGGRGGRGTSTFSSWHERSGGHGYGHESGDRNDGGFHDGYDKGQNRSRSRSPDRFDSGS
GRERSPVLSFHEMMMKRDRSSAGDH
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcttccactgtgactgcctcttctggtccccgttatgctccacctgatcccactcta
cccaaaccatggaaaggcctagttgatggtaaaactggttatctttacttttggaatcct
gtaacaaatgtcacacaatatgaaaggcctacaagtggtgattctgtcccaaaaccttct
gttacacctgtaagttcttcagttcaagttcaacagtcttctgaaggatgtcatggttat
aatcttggcaaggaaaatgatcgggatgaaatggacagtgaagccatatcaaaccagaat
gctagaagtggaccagttcattcccataatacacctaatgtgacttccagctctgtaatt
ggaggaccttctgcaaaggggcaaggatccgtgactggtggaagaaatttgtctggtgat
gcttatcgccgtcagcatgagataacagtaaccggagatgaagtgcccatgcctttttca
tcatttgaatctactggattaccttctgagatacttagagaggtacacaatgctggattt
tctgctccaactccaattcaggctcaatcatggccaattgctttgcaaggaagagacata
gtggccattgcaaaaactggttccgggaaaacattgggttaccttatgcctggatttatg
catatcaagcagtatcgtaagaatcctcaaatgggtccaactgtgttggtattatcacct
accagggagctggctactcagatacaagatgaagctcacaagtttggcaattcgtcaaga
attagttgcacatgtttgtatggaggggcacccaaaggtcctcagttgagagaggttgag
aaaggaattgatattgtggttgctactcctggccggttaaatgatattctcgagatgcgg
aaaatcagcctccaacaagtttcttacctggtgttagatgaggctgatcgcatgttagac
atgggttttgaacctcagatacggaagattgtgaaagaagtgccaacccgcaggcagacg
ctcatgtacacagcaacatggccaaaggaagttcggaaaattgcggcagacctactggta
aatcctgttcaggtcaacattggcaatattgatgaacttgtggcaaacaagtctattacg
cagcatgtcgaagtattatcaccaatggtaaaacacaaaagacttgagcagatactacgc
tcccaagaaccaggatccaagataattattttttgttcaaccaagaggatgtgtgatcaa
cttgctcgcaacctcagtcggtttggagctgctgctatccatggtgacaaatctcaggct
gacagggactatgtgcttggtcagttccgatctgggaggacaccagtgcttgttgcaact
gatgtagctgctcggggactggatgtaaaggacatcaggtgggggttggaatttctgctg
catggttccatggctttatgcttctatagctctaggaagccaaagctgataaattcagga
aacacttgggtggtaatcaactatgacttccctactggaattgaggattatgttcatagg
attgggaggactggaagggcaggtgcaactggattggcgtttacattctttggtgaccag
gattcaaagcatgcttcagatctcatcaaaattctagagggagcaaaccagaaggtgcct
gcagaacttcatgaaatggcttcacgtggtggtggcatgggaaggcctagacgttgggct
ccaagttctggtggccatgatggaggatgtggtggatgcactgattcaggttgtggtggt
agggatggtggaaggggtggtcgaggaacttctacattctctagttggcatgaaagaagt
ggagggcatgggtatggtcacgagtctggtgacaggaatgatggtggtttccatgatggt
tatgataagggacaaaatcgcagccggagtcgtagccctgacaggtttgatagtggttca
ggacgtgaacgttccccagtgctcagttttcatgagatgatgatgaaacgtgatcggtca
tccgcaggtgatcactaa
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