Hibiscus syriacus (Rose-of-Sharon): 120145542
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Entry
120145542 CDS
T09559
Name
(RefSeq) LOW QUALITY PROTEIN: NPC intracellular cholesterol transporter 1-like
KO
K12385
Niemann-Pick C1 protein
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
120145542
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
120145542
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hsyr02000
]
120145542
Transporters [BR:
hsyr02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
120145542
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NPC1_N
Sterol-sensing
NPC1_MLD
Patched
Motif
Other DBs
NCBI-GeneID:
120145542
NCBI-ProteinID:
XP_039015297
LinkDB
All DBs
Position
Unknown
AA seq
1232 aa
AA seq
DB search
MYDICGQRSDGKVLNCPYGSPSVKPDVLFSAKIQSLCPSISGNVCCTEDQFDTLRAQVQQ
AIPFLVGCPACLRNFLNLFCELSCSPNQSLFINVTSVSEVNGNLTVDGIDFFVSDAFGEG
LYDSCKEVKFGTMNTRAIEFIGAGATNFKGEFKFCHIIGQKAAPGFPGSPYAIDFKSTVP
DLSGMRLMNVSTYSCGDASLGCSCGDCPSSPQCSNSEPPSPPKKDHCSITIGPVKVRCID
FALAIAYIILVLGLFGWALFHWQREGILESEREPLLKSIDEDEANSSNMQYDENLALEGR
GVASQLKNEAQLSIIQGYMSRFYRSYGIWVARNPTLVLGSSLAVVIVLCFGLIHIEVETR
PEKLWVGPGSKAAEEKQFFDSHLAPFYRIEQLILATLPDKTQGKSPSIVSDDNIRLLFEI
QEKVDGLRAIYSGLNVSLTDICLKPLGHDCATQSILQYFKMDRENFENYGGVTHAEYCFQ
HYTSSDTCMSAFEAPLDPSTALGGFSGINYSEASAFVVTYPVNNAIDEAGNGNGKAVAWE
KAFVQLVKDELLPLVQSRNLSLSFSSESSIEEELKRESTADIMTIVVSYLVMFAYISITL
GDEPRLSTFYISSKVLLGLSGVVLVMLSVLGSVGLFSAFGVKSTLIIMEVIPFLVLAVGV
DNMCILVHAVKRQPLALPLEERISNAMVEVGLSITLASLSEILAFSVGGFTPMPACRVFS
LFAAVAVLLDFLLQVTAFVSLIVFDCLRAEDNRIDCFPCIKIPSSTQEPDEGMNSGGPGL
LARYMQEIHAPFLGLWAVKVVVIAVFIAFSLASIALSTRVESGLEQQIVLPRDSYLQGYF
TNISEYLRIGPPLYFVVKDYNYSLESRDTNKLCSINHCDSNSLLNGISRASLVPESSFIA
KSAASWLDDFLVWLSPEAFSCCRKFTNGSYCPPDDQPPCCSPGGGSCGLGGVCKDCTMCF
RHADLVNDRPFTEQFREKLPWFLNALPSADCAKGGHGAYTSSVDLNGYENGVIKASEFRT
YHTPVNRQGDYVNALRAAREFSSRVSDSLKMQIFPYSVFYIFFEQYLDIWRIALTNIAIA
LGAIFIVCLVITSSLWISAIIVLVLVMIVVDLMGVMAILGIQLNAVSVVNLIMSIGIAVE
FCVHIANAFLVSNGSRDQRMKEALSTIGASVFSGITLTKLVGVVVLFFSRSELFVVYYFQ
MYLALVLIGFLHGLVFLPVVLSLMGPPARNIV
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atgtatgacatatgtggacaacgtagtgatgggaaagttctaaattgcccttatggttcg
ccatcagtgaagcccgatgtgctattttctgccaaaattcaaagcttgtgtccatcaata
agcggtaatgtttgttgcacagaggatcaatttgacacattgcgggcacaagttcagcag
gccattcctttccttgttggttgtccagcgtgcttgaggaacttcttaaatctcttctgc
gagctttcatgctctcctaatcaaagtctattcatcaatgtgacttctgtttcagaggtt
aatggcaacttaacagtggatggcatcgacttttttgtatctgatgcttttggagaaggg
ctttatgactcctgtaaggaggtaaagtttgggaccatgaatacaagagccattgaattc
ataggagctggggcaacaaactttaaaggtgaatttaagttttgtcatattattggtcag
aaagctgctcctggatttcctggttcaccttacgctattgatttcaagtctactgttccc
gacttatctggaatgaggctgatgaacgtttctacttattcatgtggtgatgcctctctt
ggctgctcttgtggtgattgcccttcatcacctcaatgctccaactctgaacctccttca
ccaccgaaaaaagatcactgctcaataactattgggcctgttaaggtaagatgtatagac
tttgcattagctatagcatatatcatattggttttgggactttttggatgggcgttgttt
cattggcaacgagaaggaatacttgaatctgaaagggaaccattactgaagtcaatagat
gaagatgaagcaaattcgtctaacatgcaatatgatgagaaccttgctttggagggacgt
ggggtggcttcacaactgaaaaatgaggcgcaactttccattattcaaggatatatgtcg
aggttttacaggagttatggaatatgggttgctagaaatcctactcttgtattgggttca
tcgttggcagttgttattgtgctatgttttggtctcattcatattgaagtggagacacgg
ccagagaagttgtgggtaggccctggaagtaaggcagcggaagagaaacagttttttgac
agtcaccttgcacctttctacagaattgaacagcttatattagcaactttgcctgataaa
acacaagggaagtcccccagtatagtttcagacgataacatccgactgctttttgaaatt
caagagaaggttgatggacttcgtgcaatttattctggtttgaatgtgtctcttaccgat
atttgtttgaagccacttggccacgattgtgctactcagagtattttacagtacttcaag
atggatcgggaaaactttgaaaactatggaggagttacacatgctgagtactgttttcag
cattacacttcttcagatacatgtatgagtgcatttgaggctccacttgatcctagcact
gcgttagggggattttctgggatcaattattctgaggcttctgcatttgttgtgacatac
ccagttaataatgcaattgatgaagcaggcaacgggaatgggaaggcagtggcttgggaa
aaagcttttgttcagttagtgaaggatgagctgctacctttagttcagtctagaaatctc
tctctttcattttcatctgaaagctcaattgaggaagaactgaaaagagagagcactgca
gatattatgacaattgtggtaagctatcttgtaatgtttgcttacatttctatcacattg
ggtgatgaacctcgtttgtctactttctatatctcatccaaggtcttgcttggtctttcg
ggagttgttcttgtcatgctctccgttcttggatctgttgggttgttcagtgcttttgga
gttaagtcaacattgatcataatggaagtgataccttttttggttttggctgttggagtg
gataacatgtgtatactggttcatgccgtaaaacggcaaccgttggcgttacctttagag
gagcgaatcagtaatgcaatggttgaagttggtctatccataacactagctagtttgtct
gagatccttgcattttctgttggaggtttcactcctatgccagcatgccgtgtcttttcc
ctgtttgcagctgtggctgttttgctggacttccttctacaagttactgcttttgtttca
ctgatagtcttcgactgtctgagagctgaggataacaggattgactgttttccatgcata
aaaattccgtcatctactcaagagcctgatgaaggcatgaactcaggaggacctggactt
ttggcaagatatatgcaagaaatacatgcgccctttcttggactttgggctgtcaaagtg
gtagtaattgccgtctttattgctttttctttggcaagcatagccctttccacaagggtt
gagtctggtttggagcaacaaattgttcttcctcgggactcgtatcttcagggatacttc
accaatatctcagaatatctcagaatcggaccaccattgtactttgttgttaaggattac
aactacagcttggaatcaagagatacaaataagttatgctccatcaaccactgtgattct
aactctctcttgaatgggatatcaagggcatcattagttcctgaatcaagcttcattgca
aagtcagctgcttcatggcttgatgattttcttgtatggttatcaccagaggcatttagt
tgttgtcggaagtttacaaatggctcttactgtcctccagatgatcaaccaccttgctgt
tcacccggtggaggttcttgtggtttaggtggagtctgcaaagactgtacaatgtgcttc
cgccacgcggatttggttaatgatcgcccatttacagagcaatttagagagaagcttcct
tggttccttaatgctctgccatccgctgattgtgccaaaggtggtcatggggcttatact
agcagtgtggatttgaatggttatgaaaatggtgttataaaagcatcagagtttcgtact
tatcacacaccagttaacagacaaggtgactatgttaatgctttgcgagctgcaagggag
ttcagctcaagagtttctgattcactgaagatgcaaatctttccctattcagtcttctat
attttctttgagcaatatcttgatatttggaggattgctttgacgaatattgctattgca
ctaggtgctatttttattgtctgtctggtcatcacatccagtttgtggatttccgccatc
attgtactggtattggtgatgattgttgtagatctcatgggtgtaatggcaattctgggt
attcagctcaacgcagtttcagtcgtgaaccttatcatgtcaatagggattgccgttgaa
ttctgtgtccatatagcaaatgctttcttggtcagtaatgggagtagggatcaaagaatg
aaggaggctcttagtaccattggagcatctgtattcagtggaataaccctcacgaagctt
gtaggagtggttgtgcttttcttctcaagatcagaactttttgtggtatattactttcag
atgtacttagcattggttcttatcggtttcttgcacgggcttgtgtttttacctgtggtg
ctgagtttgatgggtcctcccgcaagaaatattgtttag
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