Hibiscus syriacus (Rose-of-Sharon): 120146117
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Entry
120146117 CDS
T09559
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120146117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsyr03021
]
120146117
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120146117
Transcription machinery [BR:
hsyr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120146117
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
120146117
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
120146117
NCBI-ProteinID:
XP_039015706
LinkDB
All DBs
Position
Unknown
AA seq
1001 aa
AA seq
DB search
MDNPRRPLDRSRGSGLKKQRLTEDLALNPSGRPFPQRTNPAGPASALRFRPNYSDADDLS
PGGGAYEPQPVSHHQQQRQHQELVSQYKTALAELTFNSKPIITNLTIIAGENVHAAKAIA
TTVCANILEVPGDQKLPLLYLLDSIVKNIGRDYIKHFAARLPEVFCKAYRQVDPPVHQSM
RHLFGTWKGVFPLQTLQVIEKELGFAPMINGSSSGTTTSRPDPLSQRPPHSIHVNPKYLE
KQQLQQFSRVKGSVTDMTGTLANSKEDYERPDRAAITAGRPCGDTSVKMNTYGVGVGRAS
VTEVISSQRNGFNIKHGSQNYPASKSVNADPRLVARQNIAGRRSNVMPSSWKNSEEEEFM
WEMHSRLSQHDAANISSNSRKDHWIPDVSEKLDFDSSLRKAQSIPDVGSRFDRETSSDSL
STEQKDKPSYGRRISSAWPRQESHKADGLPAFSSSHYESYSATLGGLPTAASSSLARIEM
RPQTGSSHFGQQRFQSLGTASPPEQSPTCQHSPSPSFPAHHTQSLPHSDSNLSQFSGKLD
VGSLKHSHQVSSALISRSSRHYPLSQPPKPDHVQFESSGQTQKPLLSQISEVGTASIFGN
AREHTNPLAIGTPEPSSTSSLLAAVMKSGILSNTSFIGSLPNKILQDLEQMPSQLSLPSG
SPPATFTLSGSASHDAIATTTNSSQGKAEWLPSSSLVNNAPLQTSDIESKASNPVSNLLS
SLVAKGLISASNKDALSVPSLQIPTQMQKTPERERPTESLAKSLEISISSPSPASSVPSS
SDAPRSSMDEISFAEPATKSSAASHQSASVEVGNLVGLEFRPDVIRELHSSVISGLMDNL
AYCCSLCGLRLKLQEQLNRHLEWHAMKKVEPKGSDRALRGWYAQSDDWIAGKPGQLVFES
TGSMNQSEMTTDKTELMVPADENQYACMLCGELFEDFFSQGRGEWMFKGAVYLTIPSKDG
EGGTATYETAAKGPIVHANCMSESSIHDLGLAGGIKMEKGE
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atggataatccgcgtcgaccgttagatagatcaagagggtccggcttgaaaaaacaacgt
ttaaccgaagaccttgctctgaaccccagcggccggccttttcctcaacggacgaaccct
gctggtccggcatctgctttaagattcaggcccaattattcggacgccgacgatttgagt
cctggcggtggagcttatgagccacaaccagtgtcacatcaccagcaacagcggcaacat
caggagttagttagccagtacaagacggccttagctgagttgacttttaactcgaagccg
attataactaacttgacaataatagccggagagaatgttcatgcggccaaggcgattgcc
accactgtctgcgccaacattcttgaggttcccggtgaccaaaagctgccattgctgtat
cttttggacagtattgtaaagaatattgggagagattacattaaacatttcgctgccaga
ttaccagaggtgttctgcaaagcatatagacaagttgatcctcctgtgcatcagagtatg
cggcatctttttggaacatggaaaggggtattccctcttcaaactctccaggtgattgaa
aaggaactcggctttgctcccatgataaatggttcatcttcgggaacgacaacatcaaga
cctgatccactttcacaacgtccaccacatagcattcatgtaaacccgaagtatctagaa
aaacagcaacttcaacagtttagcagggtgaaaggtagtgtcactgatatgaccgggact
ttggccaactcaaaggaggattatgagaggccagatagagcagccattactgccggacgg
ccatgtggagatacttctgttaaaatgaacacttacggtgtgggtgttggaagagccagt
gttactgaggttatttccagccagaggaatggtttcaatattaaacatggatctcaaaat
tacccggcatccaaatctgtgaatgctgatcctcgtttagtggcaagacagaacattgct
ggaaggagaagtaatgtgatgcccagcagctggaaaaactctgaggaagaagaattcatg
tgggagatgcactctagattgtctcaacatgatgctgccaacatctctagtaactcgagg
aaagatcattggattcctgatgtttcggagaagttggattttgacagttcgctccgcaaa
gcacaaagtattcctgatgttgggtccaggttcgacagagaaacatcttccgattcatta
tccactgagcagaaggacaaaccttcctatggacgccggatttcatctgcatggccaagg
caggagtcacataaagcagatggattgcctgcttttagttccagccattatgaaagctat
tctgccactcttggtgggttgcctactgctgcaagttcttctctggccaggattgaaatg
cgaccccaaacgggttcatctcattttggacagcagcgttttcagtccctgggaactgca
tcaccacctgaacagtctcctacgtgccagcattccccttcaccttcatttcctgcacac
catactcaatccctccctcactctgattcaaacttatcccagttttcaggaaagttggat
gttgggtctcttaaacactcccatcaggtttcatctgctttgatttctcgatctagccgc
cattatcccctttcacagccaccaaaaccagaccacgtgcagtttgaatcttctggtcag
actcagaagccgcttctgtctcagatctctgaagtaggaacagcttcaatattcggaaat
gcaagagagcataccaatccacttgctattggaactccagaaccgtcaagtacaagtagt
ctattggctgctgtaatgaagagtggaattctctccaatacttcctttattggcagtctt
cccaataagattcttcaagatttggagcaaatgccatcacagctttctcttccaagtggg
tctccgcctgctactttcactttgtctggttctgcatcccatgatgcaatagcaactaca
acaaatagttctcagggaaaagcagaatggctaccgtcttcatctcttgttaataatgcc
ccactgcaaacatcagatattgaaagcaaggcttcgaatccagtatccaaccttttgagc
tcattagttgccaaaggtttaatatctgcatcaaataaagatgctctgtctgtcccatct
cttcaaatacctactcaaatgcagaagacaccagaaagggagagaccaactgaatcactg
gccaagagcttggaaatttctatcagtagcccttcaccagcttcttctgttcctagttca
tctgatgctcctcgttcctccatggacgagatatcatttgctgaacctgctacaaaaagt
tcagctgcctcgcatcagtctgcctcagtagaagtaggaaacctcgtaggactggaattc
agacctgatgtaatcagagaacttcattcatctgtgatcagtggactgatggataacctt
gcgtattgttgcagcttatgtggtcttcgacttaagcttcaggaacagctcaatagacac
ttagagtggcatgccatgaaaaaggttgagccaaaaggttccgatagagcactgagggga
tggtatgcacagtcagatgactggattgccggaaagccagggcaattagtatttgaatcc
actggatcaatgaaccagtctgaaatgacaacagataagactgagcttatggttcccgca
gatgaaaatcaatatgcatgcatgttatgtggtgagctattcgaagatttctttagccag
ggcaggggtgaatggatgtttaagggagctgtatacttgactatcccatcaaaggatggt
gagggtggaactgctacgtatgagactgcagccaagggtcccattgtgcatgcaaattgt
atgtcagagagttcaattcatgacctgggactggctggtggtattaaaatggaaaaggga
gaataa
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