Hibiscus syriacus (Rose-of-Sharon): 120146455
Help
Entry
120146455 CDS
T09559
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120146455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120146455
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120146455
mRNA degradation factors
5'-3' decay
Decapping complex
120146455
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
120146455
NCBI-ProteinID:
XP_039015934
LinkDB
All DBs
Position
Unknown
AA seq
840 aa
AA seq
DB search
MERSSGKLPSNFSQISSDNAFFDASQYEFFGQNSMEEAVLGVLEDGEVEAPMFASIEDDE
YRLFDKGEVGGLGSLSDMDDLASTFAKLNRVVTGPRNPGVIGDRSGSFSRESSSANDWAQ
DGEFLNWMDQHMFDTEDAQESKRWSSQPQSSSAHFSESKPLYRTSSYPQQQPEPLFIFDT
DDAQEGKRWSSQPQPSPARFSESKLLYRTLSYPKQQPELHFSSEPIVGPKSSTFTSFPPP
GSRGQQNLPGNLKIPVLTSGSQSHFSAASLSSMSTTSLHLASLSQGLHFGGNLPQLTSLG
LSFSSRSQNYWVNQFGLLHGERAGLLHHMSQQQIPHLNGLISSQQQFQEQRLHAVQPSFA
HFTALQSQLHNSHPSSHKMMFGLADHREHRTKSSQRNRQNMHFSQQSSDTGSQKSERGLV
QFRSKYMTGEEIENILKIQHAATHSNDPYVDDYYHQACLAKRSSASRAKHQFFPSRKKES
HSRSRNSGDQHLHLHMDAHGKVSLSSIRRLHPLLEVDPPLGSGNGSDQKTVRPLEQEPML
AARITIEDGFSLLLEIDDIDRLIQFSQPHDGGAQLRRRRQILLEGMATSLQLVDPLGKGA
HAVSCAPEDDIVFLRLVSLAKGRKLITRFLKLLIPGGELIRIACMTIFRHLRFLFGGLSS
DLEAARTTNDLAKTVSMCVNGMDLRALSACLVAVVCSKEQPPLRPLGSSAGDGASVILKS
VLERATKLLSHPSGNCSMPNYAFWRASFDEFFTLLTKSCVSKYEIIIQSIRNQTQPSTEV
ISSGAIRREMPCELLRASLPHTNESQGKLLMDFSQHSVPMNGSNLPAGSTSQINSESVRG
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggaaagatctagcggcaaacttcccagcaacttctctcaaatttcatcagataatgcg
ttttttgatgcttcccagtatgaattttttggtcaaaattctatggaagaagcggtgttg
ggagttctggaagatggtgaagtggaagctcctatgtttgcatccattgaagacgatgag
taccgtttgtttgataaaggagaggttggaggtttagggtcattatctgatatggatgat
ctggctagtacttttgcaaagttgaatagggttgtcacaggaccaagaaatccaggagtt
attggtgatagatctggttcgttttcaagggaaagttcatctgctaatgactgggctcaa
gatggagagtttttaaactggatggatcagcatatgtttgatacagaagatgctcaagaa
agcaagagatggtcctcacaaccacaatcatcatctgctcatttttcagaatcaaaacct
ttgtatagaacttcatcatatccccagcagcaaccagagcctctcttcatctttgataca
gatgacgctcaagaaggcaagagatggtcttctcagccacaaccatctcctgctcgtttt
tcagaatcaaagcttttgtatagaactttgtcatatcccaagcagcaaccagagcttcac
ttctcaagcgaaccaattgttggacccaaatcatcaaccttcacatctttccctcctcct
ggtagcagaggccagcagaatttgcctggcaacctaaaaattcctgttcttactagtgga
tctcagtcacacttctctgcagcaagcctctcttcgatgtctaccaccagtcttcatctg
gccagtctatcacagggattacattttggtggtaatttgccccagttaacatctcttggc
ctatcttttagtagcaggtctcaaaattattgggttaaccaatttggtctattgcatgga
gaacgtgctggtcttttgcatcatatgtcgcaacagcaaatacctcatctaaatggccta
atttcttctcaacagcagtttcaagagcagagactacatgcagtccaaccatcttttgca
cattttactgcattgcaatctcaactgcataattcccatccttcatctcacaaaatgatg
tttggactggctgatcatagggaacatcgaactaaatcatcacaaagaaacaggcagaac
atgcatttttctcagcaaagttcagatactggtagccagaaaagtgagagaggattggtg
caattcagatccaagtatatgactggtgaagagatagagaacattctcaagatacagcat
gccgccacgcatagtaatgacccttatgtagatgattattaccaccaagcttgtcttgct
aaacgatcttctgcatctagggctaaacatcaatttttcccatctcgcaagaaagaatca
cattctcgatcccgtaacagcggggatcagcatttgcatctccatatggatgcacatggg
aaagtttccctctcttccattcgtagactccatcctctgcttgaagttgatcctccctta
ggttcaggtaatggttctgatcagaaaactgtgaggcctctagagcaggaacctatgctt
gcagctagaatcaccattgaagatggtttcagtcttcttcttgaaatagatgatattgac
cggctcatacaatttagtcaaccccatgatggtggggctcagctcagacggaggcggcag
atcctgcttgaaggcatggcgacatcacttcagcttgttgatccacttggaaaaggtgca
catgcagttagctgcgctccggaagatgacattgtgttcttaagattagtctctcttgca
aaaggccggaagcttataactaggttccttaagcttctcatccctgggggtgagcttata
cgaatagcatgcatgaccattttccgtcacttgaggttcttgtttggtggtctttcttcg
gacctggaagcagccaggacaacgaatgaccttgcaaagactgtttccatgtgtgttaat
ggaatggatcttcgtgcgcttagtgcatgccttgttgcagttgtttgttctaaagagcag
cctccacttaggccccttggaagctctgctggggatggtgcgtctgttattttaaaatca
gttcttgaaagggcaactaaacttctaagtcatccttctggaaattgcagcatgcctaat
tatgccttctggagagcttcgtttgatgaatttttcacccttcttaccaagtcttgtgtg
agtaaatacgagataatcatccaatcaatacgaaaccagactcagccatccacagaagtc
atcagttcaggggctataaggcgtgaaatgccttgtgagcttctacgagccagtcttcct
cacacaaatgagtcccaagggaagcttttgatggacttttctcagcattctgtgcccatg
aatggatccaatttgcctgctgggagtactagccaaatcaactccgaatcggtaagggga
taa
DBGET
integrated database retrieval system
