Hibiscus syriacus (Rose-of-Sharon): 120146596
Help
Entry
120146596 CDS
T09559
Name
(RefSeq) splicing factor 3B subunit 3-like isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120146596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsyr03021
]
120146596
03041 Spliceosome [BR:
hsyr03041
]
120146596
03036 Chromosome and associated proteins [BR:
hsyr03036
]
120146596
Transcription machinery [BR:
hsyr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
120146596
Spliceosome [BR:
hsyr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
120146596
Complex B
120146596
Complex C
U2 SnRNP specific factors
120146596
Chromosome and associated proteins [BR:
hsyr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
120146596
TFTC complex
120146596
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
120146596
NCBI-ProteinID:
XP_039016046
LinkDB
All DBs
Position
Unknown
AA seq
1390 aa
AA seq
DB search
MALSEEVCSTKKASSSSPSSSSAAVSQGINYLAKCVLRGSVILQVAYGHLRSPSSLDVVF
GKETSIELVIIGEDGIATSVCEQTVFGTIKDLAILPWNEKVYGQNTQMRGKDLLVVISDS
GKLSFLTFCNEMQRFFPVDHVQLSAPGNSRRQLGRMLAVDSTGRFIATSAYEDRLALFSL
SMSDGDDIVDEKIFYPPENEGSGSSSRNPQRTSIRGTIWSMCFVSKDSVQTNKEHNPVLA
IVLNRKGNTLNELVLLGWNIKEHAVCILSQYLEAGPLAHSIVEVPHSCGYAFLFRVGDAL
LMDLRDAHNPHCVYRTTLDFSVHTPEEHICVEELCTAHEFDDDGLFNVAACALLQLSDYD
PMCIDDASGSGKTTCKHVCSFSWEPKSDRSPRMITCLDTGEFYMIDISFDSDGPKVNISD
CLYKSQACKSLLWVDGGFLVAIVDMGDGLVLKIENEKLIYRSPVQNIAPILDMSIVDYHG
EKRDKMFACCGVAPEGSLRIIRSGISVEKLLRTAPIYQGISGTWTVRMKVRNSYHSFLVL
SFVEETRVLSVGLSFTDVTDSVGFQPDVCTLACGLVGDGQLVQIHQNAVRLCFPTKAAHS
EGIPLSSPVCTTWSPDNTSISLGAVGQSLIVVSTCNPYFLFILGVRSLTAYNHEIYELQR
VRLQYELSCISIPQKHFEMTHLSSNLNLMGDIERAVFPVGAGTSVTFVVGTHKPSVEILS
FTPQGLRVLGTGTISLTTTMETAISGCIPQDVRLVLVDQFYVLAGLRNGMLLRFEWPSAF
STSSELRAHSSSIPLLGKVERFLLNTKTNLLGSQTCSVNMGEKDGLAVTLQLIATRRIGI
TPVFLVPLSDSLDADIIALSDRPWLLHTARHSLSYTSISFQPSTHATPVCSGECPKGTLF
VADNSLHLVEMVHSKRLNVQKFHIGGTPRKVLYHSDSKLLIVMRTELSNDTCSSEICGVD
PLSGSVVASFKLELGETGKCMELVSAGNEQVLVVGTSLSPGPAIMPSGEAESTKGRLIVL
CIEHVQHTDSGSMMFSSMAGSSSQRNSPFREIVGHATEQLSSSSICSSPDDASCDGVKFE
ETEAWQLRSAYTTTWPGMVLAICPYLDRYFLASAGNALYVCGFPGDNPQRVRRFAIARTR
FMITSLTAYRNRIAVGDCRDGILFYSYNEDTKKLDQTYCDPSQRLVADCVLTDVDTAVVS
DRKGSIAVLSCSDRLEDNASPERNLTLSCAYYMGEIAMSIRKGSFIYKLPADDTLNNCEA
LNASVDPSHSAIMASTLLGSIMIFIPISREEYELLEAVQARLIVHPLTAPVLGNDHNEYR
SRENPVGVPKILDGDMLAQFLELTSIQQEAVLSFPIVSPDTQKLSSKLTPSPIPVNKVVQ
LLEQVHYALN
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggcgctttccgaggaagtgtgctcaacgaaaaaggcatcttcctcttcaccttcatcc
tcgtcggcggctgtttcgcaaggcattaactaccttgccaagtgtgtacttagaggaagt
gttatcctccaggtagcttacggtcacctccgctctccttcttctttggacgtcgttttc
ggcaaggaaacgtccatagagttggtaataattggtgaagatggtattgcaacttctgtc
tgtgagcagactgtctttggtacgataaaggatcttgctattctaccttggaatgagaag
gtctatggtcaaaatacacagatgcgagggaaagacctgttggtcgttatttctgattct
ggaaagctatcgtttctcacattttgcaatgagatgcagaggttttttcccgtggaccat
gttcagctttctgctcctggaaactcaaggcgtcaacttggaagaatgctagctgttgat
tccactggccgtttcattgctactagtgcttatgaagaccgattagctcttttttccctt
tcaatgtctgacggagatgatattgttgatgagaaaatattttaccctcccgagaatgaa
ggcagtggtagttcttccagaaatccccaaagaaccagtatacgtggtacaatatggagc
atgtgctttgtttcaaaagattctgtccaaacaaataaggagcataatcctgttttagcc
attgttctaaataggaaaggtaataccctgaatgaactggtattgttgggatggaatatt
aaagagcatgcagtttgcatcctttcgcaatatcttgaagctggaccactagcacatagc
attgttgaagttcctcattcctgtggatatgcattcctttttagggttggtgatgctctc
ttgatggatcttagagatgcacataatcctcattgcgtttatagaacaaccttagacttt
tcagtccatacacctgaggaacatatatgtgttgaagagctatgtacagctcatgaattt
gatgatgatgggttatttaatgttgctgcatgtgctttacttcagctgagtgactatgat
ccgatgtgtatagatgacgcaagtggaagtggaaaaacgacctgcaaacatgtatgctca
tttagttgggaaccgaaaagtgatcgaagcccgaggatgatcacttgtcttgataccgga
gaattttacatgattgacatttcatttgattctgatggtcctaaagtgaatatatctgat
tgcctctacaaaagtcaagcttgcaagtcccttttgtgggtcgatggtgggtttctagtg
gcaattgttgacatgggggatggtctggtccttaagatagaaaacgagaagctaatatac
agaagtcctgttcaaaatatagctccaatcttggacatgtcaatagtggattaccatggg
gagaaacgtgataaaatgtttgcatgctgtggtgtcgcacctgagggatcattaagaatc
atacgaagtggtattagtgtagaaaagcttctaagaactgctcctatttaccaaggcata
agtggaacctggacagttaggatgaaagttagaaacagttatcattcttttctcgtgcta
tcatttgtagaagagactagagtactatcagttggattaagctttactgatgttactgat
tctgttggcttccaaccagatgtctgtactttggcatgtggtcttgttggtgatggtcag
cttgtccaaattcaccaaaatgcagttaggctttgtttccctacaaaggcagcccattct
gaaggcatccctttgtcttctccagtctgcacaacttggtccccggataatacgagtatc
agtttaggggcagttgggcaaagtttgatagttgtctccacttgtaatccatattttctt
tttattcttggggtcagatcactaacagcatataatcatgaaatatatgagttgcagcgt
gtgagattgcagtatgagttatcatgtatatcaatacctcaaaagcattttgagatgacg
catttaagctctaatttaaacttgatgggtgatattgagagagctgtttttccagttgga
gctggcacgagtgttacctttgttgttggtacccataagccttctgtggaaattctgtca
tttacaccccaaggtctaagagttcttggtactggaacaatttcactaacaactactatg
gaaactgctattagtggttgcattcctcaagatgtaaggctagtgctagttgatcagttt
tatgttctggcagggttgaggaatggaatgctacttcggtttgagtggccttctgctttt
tctacttcatcggaactacgtgcacatagttcttctattcctttgttgggaaaggttgag
agatttttattgaatacaaaaacaaatttgcttggttcacaaacatgttctgttaatatg
ggtgagaaagatggccttgcagtcactcttcaattgatcgcaacacgtagaattggcatt
accccagttttcctggttcccctgagcgattcacttgatgcagatattatagctctcagt
gacaggccttggttattgcatacggctaggcacagcctttcttatacttctatatcattc
caaccttccacgcatgcaacccctgtgtgttctggtgaatgccctaaaggaactttattt
gttgcagataacagtttacatttggtggagatggtgcacagtaaaaggctcaatgtgcag
aagtttcatattggaggcactccacggaaggtcctgtatcatagtgatagtaagctttta
attgtgatgaggactgagctaagtaacgacacatgttcttctgaaatttgtggtgtagac
cccctcagtgggtctgtggtggcatctttcaaacttgaacttggtgaaaccggaaaatgc
atggagctagttagtgctggaaatgaacaggttctggttgttgggactagcctgtctcct
ggtccagcaataatgcccagtggtgaagctgaaagcaccaagggccgtctaattgtcctc
tgcattgaacatgtacaacacacagatagtggttcaatgatgttctcttctatggctggg
tcatcttctcaacgaaactcaccgtttcgtgaaattgttggccatgccactgaacaacta
tcaagtagtagtatctgcagtagtccagatgatgctagttgcgatggagtaaaatttgaa
gaaactgaagcatggcagttgcggtcggcttacacaaccacttggcctggaatggttctt
gctatatgtccatatctagaccgttacttcttggcctcggctggtaatgctttatatgta
tgtggttttccaggtgataatcctcaaagggtgagaagatttgcaatagcaaggacacgg
tttatgataacgtcattgactgcatatcgtaatagaattgctgtaggcgattgtcgtgat
ggtattcttttttattcatataatgaggacaccaagaaactggaccagacatattgtgac
ccatctcagaggttagttgctgattgtgttcttacagatgttgataccgctgttgtttca
gatcgtaagggcagcattgctgtcttgtcttgttcagatcgtcttgaagataatgcaagt
cctgaacgtaacttaacgctgtcttgtgcatattatatgggcgagattgccatgagcatc
aggaagggttcattcatttacaagcttcctgctgatgatacgttaaacaactgtgaggct
ctgaatgcaagtgtagatccttcacacagtgctataatggccagcacactcctcggaagc
ataatgatcttcattcctatatcaagggaggaatatgaactgttggaagctgtccaagct
agactcatcgttcatccattaactgctcctgtactaggcaatgatcataatgagtaccgt
agccgtgaaaacccggttggtgtcccgaagatacttgacggtgatatgttagctcaattc
ttggagcttactagcattcaacaagaggctgtattatcatttcccattgtttctccagat
actcaaaagttgagttcgaaactaacaccttcacctatcccagtaaacaaggtcgtacaa
ctcctcgaacaagtccattatgccttgaattaa
DBGET
integrated database retrieval system
