KEGG   Hibiscus syriacus (Rose-of-Sharon): 120146967
Entry
120146967         CDS       T09559                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 4-like isoform X1
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
hsyr  Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03020  RNA polymerase
hsyr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hsyr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    120146967
  09124 Replication and repair
   03420 Nucleotide excision repair
    120146967
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hsyr03021]
    120146967
   03400 DNA repair and recombination proteins [BR:hsyr03400]
    120146967
Transcription machinery [BR:hsyr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     120146967
DNA repair and recombination proteins [BR:hsyr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      120146967
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 120146967
NCBI-ProteinID: XP_039016375
LinkDB
Position
Unknown
AA seq 219 aa
MSDKGGRMFTLPTKATPKSSLKSSSGKDDGSAKSKKGRKVQFGTEGSPDVQFNFSSGKSD
GKFATPFGKGGKGDKVSNGGKTHVAKESQTLELRVEAELPENVKCIMDCEAASILEGIQD
QMVVLSGDPTVKLPESFHSGLQYSKGGSCYTNPQYVRKVLQSLSKHGVSNSEICMIANTC
PETVEEVFALVRSLQAKKSRLSEPLKAALDELAKLKTST
NT seq 660 nt   +upstreamnt  +downstreamnt
atgtcggacaagggaggcagaatgtttacgttgcccaccaaagcaacacccaaatcttct
ctcaaatcatcttctggaaaagatgatggttcagcaaaatcaaagaagggaaggaaagtt
cagttcggaactgaaggttcacctgatgttcagtttaatttctcatcgggaaaatctgat
ggcaagttcgcaaccccttttggtaaaggtggaaaaggagacaaagtcagcaatggtggg
aagactcatgtggccaaagaatcacagacattggagctcagagttgaagcagaacttcca
gaaaatgttaaatgcattatggattgtgaggctgccagtatcttagaaggcattcaagac
caaatggttgtactctctggcgatccaactgttaagctccctgaatcatttcattcggga
ctgcagtattccaagggtggtagctgttatactaatccgcagtatgttagaaaagttctt
caatctctttcaaaacatggtgtctctaacagtgagatttgtatgattgcaaatacttgt
ccagaaaccgttgaggaagtttttgctctcgtccgatccttgcaggctaagaaaagcagg
ctcagcgaaccacttaaagctgcattggacgagctagctaaacttaaaacatcaacctaa

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