Hibiscus syriacus (Rose-of-Sharon): 120147182
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Entry
120147182 CDS
T09559
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage stimulation factor subunit 77-like
KO
K14408
cleavage stimulation factor subunit 3
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120147182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120147182
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
120147182
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
TPR_19
PRP6_TPR
HAT_Syf1_CNRKL1_C
TPR_15
TPR_2
CFAP70_mid_TPR
TPR_Slam
TPR_YpiA
TPR_9
TPR_16
FTCD_C
Motif
Other DBs
NCBI-GeneID:
120147182
NCBI-ProteinID:
XP_039016553
LinkDB
All DBs
Position
Unknown
AA seq
753 aa
AA seq
DB search
MSAVDKYNVASAEILANSALHLPITQAAPIYEQLLSIFPTAAKYWRQYVEAQMVANNDDA
TRQIFSRCLLNCLHVPLWRCYIRFIRKVNDKKGVEGQEETRKAFDFMLSYVGADIASGPV
WMEYIAFLKSLPASNTQEESQRMTAVRKAYQRAIVTPTQHIEQLWKDYENFENSVSRQLA
KGLLSEYQPKYTSSRAVYKELKKYADEIDWNMLAVPPTDSCKDQMQWIAWKRLLAFEKGN
PQRIDSASDKRIIFSYEQCLMYLYHYPDIWYDYATWHAKSGSTDAAVKVFQRALKVLPDS
EVLKYAYAELEESRGAIPSAKKLYESILGCCSDYSTAHIQFIRFLRTNEGVEAARKYFLD
ARKSPGCTYHVYVAYALMAFCLDKDPKVAHNVFEAGMKHFMHEPLYILEYADFLSCLNDD
RNIRALFERALSSLPQEESIEIWKRFTQFERTYGDLTSMLKVEQRRKEALSGISEEGGSA
LETSLQDLISRYSFKDLWPCSSKELDHLSRQEWLLKNIGKKGEKSALSNGSAAADKSSSA
TTGISTASLKIMHPDTSQMVIYDPKQHHGTTVPSNNTASNLSNPVASVVGAASNPLINPS
VSMLDSGSANAFDEVLKATPPALIAFMSSLPAVEGPSPNVDIVLSICLQNDFPTCQTKKS
TNLPSQRTTGPAPSTSDLSGSSKSHPIPRRQLGKRKDLDRQEEDESTTVQSQPLPRDAFR
IRQMQKARGGSTSQTGSVSYGSALSGDLSGSTC
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccgttgataaatataacgtcgcgtctgctgaaattctcgccaacagtgccttg
catttgccaattacacaggcggcaccgatttatgagcaactcttatcgatcttccctact
gctgcaaaatattggaggcaatatgtggaagcacagatggtagcgaataatgacgatgct
accagacagatctttagtcgctgtttgttgaattgtcttcatgttcctctttggcgctgt
tatattcggttcatcaggaaggtcaatgacaagaaaggagtagagggccaggaagagact
cgaaaggcttttgattttatgcttagctatgttggagctgacatagcatcgggacccgta
tggatggagtacattgcttttttaaaatcactgccggcttccaacactcaggaagagtca
caacgaatgactgcagttcgaaaagcttatcagagagctattgtcactccgacacaacac
attgaacaactatggaaagattatgaaaattttgaaaattctgttagccgtcaactggcc
aaaggacttctctctgagtatcaaccaaaatataccagttcaagggctgtatataaggaa
ctgaagaaatatgccgatgaaattgattggaatatgcttgcagtaccacctactgactcc
tgcaaggaccagatgcaatggattgcatggaagaggcttttagcttttgagaaaggaaat
ccacaaaggatagacagcgcctccgataagcgaattatattctcgtatgaacagtgtctg
atgtatttataccactatcctgatatatggtatgactatgccacatggcatgctaaaagt
ggctccacggatgctgcagtcaaggtatttcagcgagccttgaaggttcttcctgactca
gaagtgctcaagtatgcatatgcagaactagaggaatcccgtggagcaatcccatccgca
aagaagttatatgaaagcattttggggtgctgctcagactacagcactgctcatatacaa
tttatccggtttctaagaacgaatgaaggtgttgaagcagctcgcaagtatttcttagat
gctcgcaaatcacctggttgcacgtaccatgtttatgttgcttatgcattgatggcattt
tgtcttgacaaggacccaaaggttgctcacaatgtttttgaagcaggcatgaaacatttt
atgcatgagcctctatatatcctagaatatgcagattttttgtcctgtttgaatgatgac
agaaacatccgggcattatttgagcgggcattaagctcactaccacaagaagaatctatt
gagatctggaaacgattcacccagtttgagagaacttatggtgatctaactagcatgttg
aaggttgagcaaaggcggaaagaagctctttctggaataagtgaagagggtggttctgca
ttggagacttctctacaagatcttatatcacgctacagtttcaaggatctctggccttgt
tcctccaaggaacttgaccacttgtcccgacaagagtggctccttaaaaacattggtaag
aaaggggagaagtcagctctttctaatggatctgcagctgcagataagagttcatcagca
acaacaggcatttcaactgcttcccttaaaatcatgcatccagatacgtctcagatggtg
atttatgatccaaagcaacatcatggaaccacagttccttcaaacaatactgcttccaat
ttgtcgaatcccgtggctagtgttgtaggggcggcttcaaatccgttaataaatccatca
gtttccatgttagacagtggatcagccaatgcatttgatgaagtactgaaagcaacgcca
cctgctttgatagcatttatgtcaagcttgcctgctgttgagggtccgtcgccaaatgta
gacattgtattgtcgatttgtttgcagaatgacttcccaacttgccagacaaaaaaatca
acgaaccttccatctcaaaggacaactggccctgctcctagcactagtgatctttctggt
tcgagcaagtcccatccaattcccagaagacagctcggtaaaagaaaggatctagacagg
caagaggaggatgaaagcacaacagttcaaagccaaccattgccaagagatgcattcagg
ataagacaaatgcagaaagccagagggggttcgacttcacaaactggatcagtttcttat
ggaagtgctctttctggggatctctctggcagtacctgctaa
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