Hibiscus syriacus (Rose-of-Sharon): 120148004
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Entry
120148004 CDS
T09559
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03013
Nucleocytoplasmic transport
hsyr03015
mRNA surveillance pathway
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120148004
09122 Translation
03013 Nucleocytoplasmic transport
120148004
03015 mRNA surveillance pathway
120148004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120148004
03041 Spliceosome [BR:
hsyr03041
]
120148004
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120148004
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120148004
Spliceosome [BR:
hsyr03041
]
Complex C
Other components
EJC/TREX
120148004
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120148004
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
120148004
NCBI-ProteinID:
XP_039017135
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MGEPRDNDAYEEELLDYEEEEEKAPDSVSSKVNGEAGKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIEPCPGQVISLV
LCHTRELAYQICHEYERFSTSLPDIKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILA
LTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaacccagagacaacgatgcttacgaggaagagcttctcgactacgaggaggaa
gaagagaaagcccccgactccgtttcttctaaagtcaacggcgaggccggcaagaagggc
tatgttgggattcacagttcaggattcagagacttccttttgaagccagagcttcttcgg
gccattgttgactctggatttgagcacccgtcggaagtgcaacacgaatgcattccccaa
gctatattgggtatggatgtcatttgtcaagctaaatcggggatggggaagactgcagtt
tttgttctgtcatcattacagcagattgaaccatgtccaggacaagttatttcccttgtt
ttatgccatacaagggagttagcttatcagatttgtcatgagtatgagaggttcagcact
tccttacctgatattaaggttgctgtcttctacggtggggtcaacattaaagtacacaaa
gatctgctgaaaaatgaatgcccccacattgttgtcgggacacctggaaggatattagct
ctgacaagagacaaggacctttctttgaagaatgtgaggcatttcattcttgacgaatgt
gacaagatgcttgaatcacttgacatgaggagagatgtgcaggagatattcaagatgacc
cctcatgataagcaagtcatgatgttttctgccacactcagcaaagaaattcgcccagtt
tgcaaaaaatttatgcaagatccaatggaaatttatgtggatgacgaggccaagttgaca
cttcatggtcttgtgcagcactacatcaaactgagtgagctggagaaaaaccgcaagttg
aatgacctacttgatgcattggacttcaaccaagttgttatctttgtcaaaagtgtgaac
cgagctgccgagttgaacaagttacttgtagagtgcaattttccttctatatgcatacac
tccggcatgtcccaggaagaaaggttgactcggtacaagagtttcaaggagggacataaa
agaattctagtggccacagatttggttggaaggggaattgacattgaacgtgttaacatt
gtcatcaactacgacatgcctgattctgctgatacctacttgcacagggttggtagggct
ggtaggtttggtaccaagggtcttgcaattacatttgtttcatctgcttcagattctgat
gtgctcaatcaggtccaggaaaggttcgaggtggatataaaggagcttcctgagcagatt
gatacatccacttacatgccatcgtaa
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