Hibiscus syriacus (Rose-of-Sharon): 120148235
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Entry
120148235 CDS
T09559
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120148235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120148235
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120148235
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120148235
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
120148235
NCBI-ProteinID:
XP_039017333
LinkDB
All DBs
Position
Unknown
AA seq
663 aa
AA seq
DB search
MSGLLNSSVNGSASNLPDSSGRSFATSFSGQSGAASPVFHHAGNIQGLHNILGSFNVPNM
PGTLASRNSALSNVPTVGVQQPTGSLSGGRFASNNLPVALSQLSHGSSHGHSGVTNRGGI
SVVGNLGFSSNTNGVGGSIPGLLPSSAAIGNRNAAPGLGVSPILGNAGTRITSSLGNMVG
GGNIGRSISSAGGLSVPGLASRLNLSANSGSGSLSVQGQNRLMSGVLPQGSQMISMLGNS
YPTAGGPLSQSHVQAVNNLSSMGMLNDVNTNDNSPFDINNDFPQLTSRPNSAGGPQGQLG
SLRKQGLSPIVQQNQEFSIQNEDFPALPGFKGGNGDYAMDMHQKEQLHDNTMSMMQSQHF
SMGRSAGFNLGGSYSSHRPQQQQQHAPSASSSVTSFSSVNNQDLLHLHGSDIFPSSHSSY
HSQTSGPPGIGLRTLNSSNTVSGMGYDQLIHQYQQHQNQSQFRLPQMSVLNQSFREPGLK
SMQATQSNPDPFGLLGLLSVIKMTDPDLTSLALGIDLTTLGLNLNSSENLHKTFGSPWSD
EPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVDTLFYIFYSMPKEEAQLYAAHELYNRG
WFYHKEHRMWFIRVPNVEPLVKTTTYERGSYHCFDPKSFETIRKDNFVVHYEYVEKRPAL
PQH
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggttactaaattcttctgtcaacggatcagcatcaaatcttccagacagtagt
ggacgctcttttgcaacatctttctctggtcagtctggtgcagcctctcctgttttccat
cacgctggcaatattcagggcttgcataatattcttggtagctttaatgttcccaacatg
cctggtacactcgcatcaagaaactcagcattaagtaatgttccaactgttggggtccaa
caacctactgggagcctatctggtggaagatttgcatcaaataatcttcctgttgctctt
tctcagttatctcatggcagctcccatggacattcaggagtaacaaatagaggaggtatt
agtgttgtaggaaatcttggatttagtagtaacacaaatggagttggcggttctatacct
gggcttctcccttcctctgctgcaattggtaaccgcaatgctgccccaggattgggagta
tccccaattttgggaaatgcaggtactaggattacgagttctttaggaaacatggttggt
gggggcaacattgggaggagtataagctctgctggtggattatctgtacctggtcttgca
tctcgtctgaatttaagtgccaatagtggatctggaagtttaagtgtgcagggacagaat
cgattgatgagtggtgtgcttcctcagggatctcagatgatttcaatgttaggcaattct
tatcctactgctgggggtcctctttcccagagccatgtccaagctgtgaacaaccttagc
tccatgggaatgttgaatgatgtgaacacaaatgacaattctccctttgacataaataat
gatttccctcagctgacaagtcgccctaattctgctggagggcctcaaggacaattgggt
tcattgcgaaaacaaggtcttagtcccattgttcaacaaaaccaagagtttagcattcaa
aatgaagatttccctgctttaccaggatttaaaggtggtaatggtgattatgcaatggat
atgcatcagaaagaacaacttcatgacaataccatgtcgatgatgcaatctcaacacttt
tctatggggagatctgcaggatttaacttgggtggatcctattcatcccatcgcccacag
cagcaacagcaacatgctccatcggccagtagtagtgtcacctccttttcatctgtaaac
aaccaagatcttctccatttgcatggctcagatattttcccatcttcacattcgagctac
cactcacagaccagtgggccacccgggattgggctacgaactctaaattcatcaaatacg
gtttctggtatgggttatgaccaactcatccatcaatatcagcaacaccaaaaccagtcg
cagtttcgtcttccacagatgtcagttttgaatcagtcatttagggaacccggcctgaaa
tcaatgcaggctacgcagtctaatcccgacccatttgggttacttggtttgctaagtgta
ataaagatgactgatcctgatctgacttctcttgctcttggaattgatctgacaacactt
gggttaaatttgaattcatcggaaaatcttcacaagacttttggttctccatggtctgat
gaaccagctaagggtgacccagagttcactgtgccacaatgttattatgctaagcagcca
cccgctttacatcaaggttatttttcaaagttcacagtggacacattgttctatatattt
tacagcatgccaaaagaggaagctcagttatatgctgcacatgaactttataatagaggc
tggttttaccacaaggagcaccgaatgtggttcataagggttcccaatgttgagccacta
gtgaagacaaccacatatgagaggggttcttaccactgtttcgatccgaaatcatttgaa
acaatccgcaaggataattttgttgtccattatgagtatgtggaaaagagaccagcttta
ccccaacattaa
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