Hibiscus syriacus (Rose-of-Sharon): 120149320
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Entry
120149320 CDS
T09559
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52C-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120149320
03041 Spliceosome [BR:
hsyr03041
]
120149320
03036 Chromosome and associated proteins [BR:
hsyr03036
]
120149320
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120149320
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120149320
mRNA cycle factors
Common to processing body (P body) and stress granule
120149320
Spliceosome [BR:
hsyr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
120149320
Chromosome and associated proteins [BR:
hsyr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120149320
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
120149320
NCBI-ProteinID:
XP_039018076
LinkDB
All DBs
Position
Unknown
AA seq
600 aa
AA seq
DB search
MTWTGMFSESTRKTTRPTRPRYLPPHMRSPQIGNASFLETGAPELTRPRFYSPQLAQSTR
GRGPWLTARRNPNWEDEKFDELEVVDDTLEEANVTNNLEAYDDIPVQASGDNIPPPVKTF
SEIDLGDGLKQNIRRCNYIKPTPIQRHAIPIAVAGRDLMACAQTGSGKTAAFCFPIISGV
LKDSLSVTRRVGGGSEVACPLALILAPTRELSCQIYEEAKKFAYMTRVQIAVAYGGTSIY
HQLRRLERGVDILVATPGRLVDMIERAKVSLGMIKYLALDEADRMLDMGFEPQIRRIVEQ
MDMPPPGTRQTMLFSATFPDEIQRFASDFLLDYVFLAVGRVGSSTDLIVQRVELVQEMDK
RNHLLNLLRTQRSNGTPHSKHALTLVFVETKRGADKLERWLSRNGFSAIAMHGDKVQMER
EQALRSFKSGATPILVATDVASRGLDIPHVAHVINFDMPKNIDDYVHRIGRTGRAGKFGL
ATAFFSDKNLHLAKSLAEVMKESSQEVPTWLIQNAENYSASGRSGWVRHRGVDYGGYDLR
KDIASSSTYNDTYAVPAIDGQYAPTFLGSGGDDHWVASDMNLNAAAPPYGYGSVVASGWD
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgacttggactggtatgttttctgagtcaactaggaaaacaactcgcccaactagaccc
cggtacctacctcctcacatgagatcacctcaaattggcaatgcttcctttcttgaaacc
ggtgcccctgagttaactcgcccacgcttctactcaccacaacttgctcaatccacccgc
ggccgtggaccctggttaaccgctcgccgcaatccaaactgggaagatgaaaagttcgac
gagctggaagttgttgatgacacattagaagaagcaaacgtaaccaacaatctcgaagct
tatgatgacattccggtacaagcaagcggcgacaacataccgccgccggtgaagaccttt
tctgagatcgatttgggggatggtttaaagcaaaacataaggaggtgcaactatattaag
ccaactccaatccaacgccacgccattcccatagcagttgccggtcgggatttgatggct
tgcgctcaaaccgggtcgggcaaaacggccgccttctgttttcccatcatttctggggtt
ttaaaggactcattgtcagtaactcgccgtgttggtggtggaagtgaggtggcgtgccct
cttgcccttattttggctcctaccagagagttgtcttgtcagatatacgaagaggctaag
aagtttgcttatatgactcgggttcaaattgctgttgcttatggaggcacttctatttat
caccagttgcgccgcttagaaagaggtgttgacatcttagttgctactcccggacggttg
gtggatatgattgagagagcaaaagtttcacttggaatgataaaatatttggctctggat
gaggctgatcgaatgttggatatgggttttgagcctcagattcgcaggattgtcgagcaa
atggacatgcctccacctggtacaaggcagacaatgcttttcagtgccacatttccagat
gagattcagagatttgcttcggatttccttttggactatgtatttctggctgttggaagg
gttggttcaagcactgatttgattgtccaaagagtggaactggttcaagagatggacaaa
agaaaccatcttttgaatcttctccgtactcaaaggtccaatggaactccccatagtaag
catgctttaactctagttttcgtggagacaaagagaggtgcagataagttggaacgctgg
ttgtcaaggaatgggttttcagcaattgcaatgcatggtgacaaagtgcagatggaaaga
gagcaagctctgagatcctttaaaagtggtgctactccaatactagttgccacagatgtt
gcttcacgaggacttgatatccctcatgttgctcacgttattaactttgacatgccgaaa
aacatagatgattatgtgcaccggataggtcgaactggccgtgctggaaaatttggtctg
gctaccgctttcttcagtgacaagaacttgcatcttgcaaagtcattggccgaagtaatg
aaggaatccagccaggaagtcccgacttggttaatccaaaatgctgagaattactctgct
agcggtcgcagcggttgggttagacaccgtggagttgattatggcggttatgacttacga
aaagacattgcatcttcaagcacttacaatgatacttatgctgttcctgccattgatggt
caatatgctccaactttccttggcagcggtggtgacgatcattgggttgccagtgacatg
aacctaaatgctgctgctccgccatatggttacggatcggtcgttgcgagtgggtgggac
tag
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