Hibiscus syriacus (Rose-of-Sharon): 120149907
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Entry
120149907 CDS
T09559
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120149907
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120149907
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120149907
mRNA degradation factors
5'-3' decay
Lsm complex
120149907
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
120149907
NCBI-ProteinID:
XP_039018543
LinkDB
All DBs
Position
Unknown
AA seq
128 aa
AA seq
DB search
MSWAGPDDIFLSTSLATYLDKKLIVLLRDGRKLLGLLRSFDQFANVVLEGACERVIVGNL
YCDIPLGLYVIRGENVVLIGEMDSEKEELPPHMTAVSAAEIKRAQKAEREATDLKGSMRK
RMEFLDFD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggctggccctgatgatatatttctctccacttctcttgccacctaccttgac
aagaaactcattgttttgctgagagatggccggaagctcctgggattgctacgttctttt
gatcaatttgctaatgttgttctagaaggagcttgtgagcgagttattgttggcaatttg
tactgtgatatccccttaggtctctatgtaatccgtggggagaatgttgtcttaatagga
gagatggactcggaaaaggaggagcttccaccacatatgactgcagtgtcggctgccgag
ataaaaagggctcagaaagcagaaagggaagcaacagatctgaagggctctatgagaaaa
agaatggagttccttgatttcgattaa
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