Hibiscus syriacus (Rose-of-Sharon): 120150630
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Entry
120150630 CDS
T09559
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120150630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsyr03021
]
120150630
03036 Chromosome and associated proteins [BR:
hsyr03036
]
120150630
Transcription machinery [BR:
hsyr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120150630
Coactivators
SAGA/TFTC/STAGA complex
120150630
Chromosome and associated proteins [BR:
hsyr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
120150630
STAGA complex
120150630
TFTC complex
120150630
SAGA complex
120150630
SLIK complex
120150630
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
Ge1_WD40
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_NWD2_C
Beta-prop_Nup120_160
WD_LRWD1
WD40_like
Beta-prop_VPS8
DUF5659
LisH
Motif
Other DBs
NCBI-GeneID:
120150630
NCBI-ProteinID:
XP_039019203
LinkDB
All DBs
Position
Unknown
AA seq
714 aa
AA seq
DB search
MENMQAVNNFVAAYLKKKGFKEAEQLLEDLQNKDSAPINFHDDPELAKFIHRFSQSEDDV
ARYQDGYSKLRSWTYSSLDLYKHELLRVLYPVFIHSFMDMVAKGHLQEARTFFNTFREDH
ELMHSRDLQKLEGVLSQSHLEEMEFSRSLRQSKVNIKICQYSYDLLLQYLHKTQSTAMLG
VINEHINFQVSSGQPSSTSDDAEVVTLIGSCQDAANQINQKEIHWGLLEDSLEERLEKAG
GLLSDSEKTEEENKEGDVDETKKRSVESGKQGASTKKLKKEKSLNATAKSARPEASTTPA
APRVKSKLPLPLMSTEVEQSILEDLRNRVQLSSVLLPSVSFYTFLNAHNGLNCSSISQDG
SLVAGGFSDSSLKVWDMAKLGQQGGSSILQAENDSISSEHVVGPNGGKRSYTLFQGHSGP
VHSATFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQVHLIFHGCLTINT
TSEVLHSLSFFRTRHFFLFVFTSNMFDVLASLQFSPAGHYFASASHDRTARIWSMDRIQP
LRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQNGECVRIFIGHRSMILSLAISP
DGRYVASGDEDGMIMMWDISSGRCITPLMGHTSCVWTLAFSCEGSLLASGSADCTVKLWD
VTTSAKVPRNEEKSGNTNRLRLLKTLATKSTPVYSLQFSRRNLLFAAGALSKNM
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatatgcaagcagtgaataacttcgtagcggcttatttgaagaagaaaggattc
aaagaagcggagcaattgttagaggatcttcagaacaaggactccgctcctatcaatttc
cacgacgaccctgaactcgctaagttcattcaccgcttctcccagtcggaggatgatgtg
gcacgttatcaggatgggtatagtaaactgaggtcatggacttatagttcgctagattta
tataagcatgaattgcttcgtgtgctttatcctgtttttatacattcgttcatggatatg
gtggcaaaaggacatctgcaagaggctagaactttcttcaatacctttcgtgaagaccat
gaattgatgcactcacgagaccttcaaaagttggaaggggttctttctcagtctcatttg
gaggagatggaattttctcgttctcttaggcagagtaaagttaacatcaagatatgtcag
tattcctatgatcttctgttgcaatatttgcataaaacacaatccactgcaatgcttggg
gtcatcaatgaacacatcaacttccaagtttcttctggacagcccagttccacttctgat
gatgcagaggttgtaacacttattggaagctgccaggacgcagctaatcagataaaccag
aaagaaatacattggggattgcttgaagactccctagaagaacgcttggagaaagcagga
ggtttgctttctgattctgaaaagacagaagaagagaacaaagagggggatgtagatgag
actaagaaaagatcagttgaaagtggaaagcaaggtgcttcaacgaaaaagttgaaaaag
gagaaatctcttaatgcaacagcaaaaagtgctcgtcctgaggctagcacaactcctgct
gcaccacgagtcaaatcaaagctccctttgcccttaatgtcaacagaagtagagcagtct
attcttgaggatttaagaaatcgtgtacaattgagcagtgttttattgccatctgtcagc
ttttatactttcctaaacgcacataatggtttgaattgttcatcaatatcccaggatgga
tctttggttgctggaggtttctcagactcatcactgaaggtttgggatatggcaaaactg
ggccaacaaggtggcagttctattttgcaggctgaaaatgattctatttcaagtgaacat
gttgtggggccaaatggtgggaaaaggtcatatacattgtttcaaggtcattcaggacca
gttcattctgccacctttagtcctcttggtgattttattctttcttcttcagcagatacc
acaattcgcttatggagcacaaaactaaatgcaaatcttgtttgctacaagggtcataat
tatcctgtctgggatgttcaggtacatctgatcttccatgggtgtttgacaataaatacc
acttctgaagttctccactccctttcattctttagaacaagacattttttcctttttgtt
tttacctctaatatgtttgatgtccttgcctccctgcagtttagtcctgcgggtcactat
tttgccagtgcttctcatgatcgaacggcaaggatatggtcgatggacagaatacaacct
ttgagaataatggcagggcacttgtctgatgttgattgtgtgcaatggcatgcaaactgc
aactatattgccactggctctagtgacaaaacagtcaggttgtgggatgtacaaaatgga
gaatgcgttcgaattttcattggtcatagaagtatgatattgtcattagcgatttcgcct
gatggtcgatatgtggcatctggtgatgaagatggcatgatcatgatgtgggacatttca
agcggaaggtgcattacacctttgatgggtcacacctcgtgtgtgtggacactagctttc
agttgcgaaggttcacttctggcatctggatctgctgattgcactgtaaaattgtgggat
gtaacaacaagcgcaaaggtccccaggaatgaagaaaagagtgggaatacaaacaggctg
agattgttgaaaacccttgcaaccaagtccactccggtgtatagtttgcagttttctaga
aggaatctgctatttgctgctggggcgctgtcaaagaacatgtaa
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