Hibiscus syriacus (Rose-of-Sharon): 120151758
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Entry
120151758 CDS
T09559
Name
(RefSeq) regulator of nonsense transcripts UPF2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03013
Nucleocytoplasmic transport
hsyr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120151758
03015 mRNA surveillance pathway
120151758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120151758
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120151758
mRNA cycle factors
P-body specific factors
120151758
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
120151758
NCBI-ProteinID:
XP_039020054
LinkDB
All DBs
Position
Unknown
AA seq
1197 aa
AA seq
DB search
MDHHEDESRAGVEQHGKQGDEEAVARLEEIKKSIECKMALRQTNLNLERPDSVFLRTLDS
SIKRNTAVIKKLKQINEEQKEGLMEELRSVNLSKFVSEAVSAICDAKLKSSDIQAAVQIC
SLLHQRYKDFSPSLIQGLLKVFFPGKSGDDLDADRNLKAMKKRSTLKLLLELYFVGVIEE
NGIFISIIKDLTSTEHLKDRDATQTNLILLASFARQGRVFLGLPISGQGIQDEFFKGLGI
TADQKKTFRKAFNVYYDAVTELLQSEHTSLRQMEHENNKILNAKGELSEENATSYEKLRK
SYDHLYRNVSSLAEALDMQPPVMPEDSHTTRVTTGDDASSPASGKESSNLEAIWDDDDTR
AFYECLPDLRAFVPAVLLGESESKESEQTSKAQEQPTESSSEADQSTPVTQDAAEASADS
GTLQEGKSIEKGKDKDEKDKEKTKDPDKEKGKEREKDTDKKGENEKEKVKGSEGTNLDAL
LQRLPGCVSRDLIDQLTVEFCYLNSKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTC
MKDVPAMLLQMLEEEFNFLINKKDQMNIETKIRNIRFIAELCKFKISPPGLVFSCLKTCL
DDFTHHNIDVACNLLETCGRFLYRSPDTTIRMANMLEILMRLKNVKNLDPRHRTLVENAY
YLCKPPERSARVSKVRPPLHQYIRKLLFTDLDKSSIEHVLRQLRKLPWSECESYLLKCFM
KVHKGKYSQIHLIASLTAGLSRYHDEFSVAVVDEVLEEIRIGLELNDYGMQQRRIAHMRF
LGELYNYEHVDSSVIFETLYLILVFGHDTAEQDILDPPEDCFRIRMVITLLQTCGHYFDR
GSSKRKLDRFLVHFQRYILSKGALPLDIEFDLQDLFAELHPNMNRYSSMEEVNAALVELE
EREHSASTDKTSNEKHSDTEKPSSRTTSHSISADQPSILNGSEENGGMHEEIGDGDSISE
SGSETIEPEGHNEDDLDEENHDGGCDSDEEDEEDGGPASDEDDEVHFRQKVAELNPLEVA
NFDQELRAVVQESMEQRKLELRGRPTLNMMIPMNVFEGSSKDHHGRLVGGESGDEALDEE
SGGSREVQVKVLVKRGNKQQTKQMYIPRDCTLVQSTKQKEAAEFEEKQDIKRLVLEYNDR
VEEENNGLGTQTLNWPSGNTRAYGRGNSWEGSSSRIGGSRHRHHSHSGSGSYYGRKK
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atggatcatcacgaagatgaatctcgggctggagttgaacagcatggaaaacaaggtgat
gaggaagccgttgctcgccttgaggaaattaagaaatctattgagtgcaaaatggctctc
cgtcaaaccaatttgaatcttgaaaggcctgactctgtattcctcaggactttggattct
agcattaagcgcaatacagctgtgattaaaaaattaaagcagataaatgaagagcagaag
gaaggattgatggaggagctacgaagtgtcaatttaagtaaatttgttagtgaagctgtc
tctgctatttgtgatgccaagcttaagagttcggatatacaagccgcagttcagatctgc
tctctgcttcatcaaaggtacaaagatttctcaccaagtctgatacaagggctcctgaaa
gtcttctttcctggaaaatctggggatgatttggatgcagacaggaacttgaaagcaatg
aagaagcgtagcactttgaaacttcttctggaactgtactttgttggagttatagaggaa
aatggtatttttatcagtatcattaaggatcttactagcacagagcacttgaaggaccgt
gatgctacgcagacaaatttaattcttcttgctagttttgctcgacaagggcgagtgttt
ctaggacttcctatttctggtcaaggaattcaagatgagttctttaagggcctcggtatc
acagcagatcaaaagaaaacttttaggaaggcattcaatgtatattatgatgctgtcact
gaacttcttcagtctgagcatacatctcttcgccaaatggagcatgagaataataagatt
ttaaatgctaaaggagagctcagtgaagaaaatgcaacttcatatgaaaagctacgaaaa
tcttatgatcatttgtaccgcaatgtctcatctttagcagaagcacttgatatgcagcct
ccggtaatgccggaggacagtcacacaactagggttaccactggagatgatgcttcatct
ccagcatctggaaaagagtcttcgaaccttgaagctatatgggatgatgacgacactaga
gctttctatgaatgcttacctgatcttagagcatttgtcccagcagtattattgggagaa
tctgagtccaaggaaagtgagcaaacatcaaaggcacaagagcaaccaactgaatcctct
tctgaagcagatcaaagtactccagtcacacaagatgctgcggaggcttctgcagactct
ggtactctgcaagaaggtaaaagtatagagaaagggaaggataaagatgaaaaagataag
gaaaagaccaaagatccagacaaggagaaagggaaagagagagaaaaagacactgataaa
aaaggtgaaaatgaaaaggaaaaggtcaaaggtagcgaagggacaaatttggatgctcta
ctgcaaagactcccaggttgtgtgagtcgtgaccttattgatcaattgacggtggaattc
tgttatttgaattcaaaatcaaatcggaaaagacttgtgagagcattgtttaatgttcca
cggacttctttggagttgcttccatactactcacgcatggttgcaacattgtcaacttgt
atgaaggatgttcctgctatgctcttgcagatgttggaggaagagttcaacttcttaatt
aataaaaaggatcaaatgaacattgaaacaaaaatcaggaacattaggtttattgcagaa
ctctgtaagttcaaaatttcaccgcctggtcttgtcttcagttgtctgaagacatgttta
gatgatttcactcatcataacattgatgtcgcttgcaatcttcttgagacttgtggtcgt
tttctgtatcgttctcctgacactaccatcagaatggctaacatgttggagatattgatg
cgcttgaaaaatgtaaagaatttggatcctcgacaccgcacacttgtagaaaatgcttac
tatctatgcaaaccgcctgaaagatctgcacgggtctctaaagttcgtcctccattgcac
cagtatattaggaagttattatttacagatcttgacaagtcttccattgagcatgttctg
aggcaacttcgtaaattaccgtggagtgaatgcgaatcatacctcttaaagtgcttcatg
aaggttcacaaggggaaatatagtcagattcacttgattgcttctctcactgctggtttg
agtcgctatcatgatgaattttctgttgctgttgtcgatgaggttctggaggagattaga
attggcctggagttaaatgattatgggatgcagcagaggcgcattgctcatatgcgtttt
cttggggagctatacaactatgagcatgttgattcttctgtcatctttgaaacactctat
ttgattcttgtttttggccatgatacagctgagcaagatatcctcgatccacctgaggat
tgttttcggatcaggatggttattactcttcttcagacatgtgggcactactttgaccga
ggttcttccaagagaaaacttgatcggttcttggtacacttccagaggtatattcttagc
aagggtgcgttaccactggatattgaattcgatttgcaggacttatttgccgaattacat
cccaacatgaaccggtattcatctatggaagaagttaatgcagctttagtagaacttgag
gaacgtgaacatagtgcttcaactgacaagacaagtaacgagaagcactccgatactgaa
aagccttctagcaggactacttcccattccatctcagctgatcaaccaagcattttgaat
ggttctgaagaaaatggtggaatgcatgaggaaatcggtgacggtgacagtatcagtgaa
tcagggagtgaaaccattgaaccagagggacataatgaagatgatttggatgaagagaat
catgatggtgggtgtgattctgatgaggaggatgaggaggatggtggacctgcttctgat
gaggacgatgaagttcatttcaggcagaaggtagccgagctcaatcctctagaagttgcc
aattttgatcaggagctccgggctgtagtgcaggagagcatggagcaacgcaagttggag
ttgaggggccgacctacattaaacatgatgattccgatgaacgtattcgagggttctagc
aaagatcatcacggaaggcttgttggaggggaaagcggtgatgaagcattggatgaagag
tctggagggagccgggaggttcaggtgaaagttctcgtgaagcgagggaacaaacaacaa
acaaagcaaatgtatattcctcgagactgtacgcttgtccaaagcacgaaacagaaagaa
gcagccgagtttgaagagaaacaagacattaagaggctggtcttggagtacaatgacagg
gttgaggaagagaataacggactcggaacacagacattgaattggccaagtggaaatact
cgagcttatggccgtgggaactcatgggaaggatccagcagcaggatcggaggatcccgt
catcgccaccatagccattctggaagtggatcttattatggaagaaaaaagtga
DBGET
integrated database retrieval system
