Hibiscus syriacus (Rose-of-Sharon): 120151855
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Entry
120151855 CDS
T09559
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120151855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsyr03021
]
120151855
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120151855
Transcription machinery [BR:
hsyr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120151855
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
120151855
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
120151855
NCBI-ProteinID:
XP_039020111
LinkDB
All DBs
Position
Unknown
AA seq
833 aa
AA seq
DB search
MAMPNELAQKQLPSISERFKALLKQREDELRVSGCVADDDLGATLTTEEILQLYEIVLSE
LTFNSKPIITDLTIIAGEQREHGEGIADAICSRIIEVPVEQKLPSLYLLDSIVKNIGREY
VRYFSSRLPEVFCEAYRQVNPNMHPAMRHLFGTWSTVFSPDVLREIEMQLQFAQPASQKS
STVTSLQTSESPRPAHGIHVNPKYLRQFEQQSGEESNTQHVRSMSSGQKLYGQKHNIGYD
EFDSDHTVVPSSHIGVQRLSSTGNVGRTSVAIGAKKPQLSSASRVSRPFSSSTTGSDRLI
SSEVDDLPSDDSPRRFAEIASPFRPGFDFGCRRGTIRDDETREWKKKHLYGDYRNSSESS
LNAYKLSNGNERQTLRALIDAYGNDRGQGMPNRKPIHVERLDVNGLGNKVTPRSWQNTEE
EEFDWEDMSPTLTARRSNEFSVSSVPAFGSIGARPAGIESNSRSSRTLVDDSSAIPEDAV
SSLSSGRGLNTIQHSRYPQDAWSSSYSFSQSSHPLHAKGRGRDFQMPFSASGSASSSLDV
VIVGAQPTILPMTSGVWPPVDVHKSQQPTVHSNYSLQQHGRSHFDSLNPINAALNQGQNE
HPYMPEQFDGLERKDQSLVMATQVPGQRSALQQRNSLHGPLLPNQPQGGAFTGLISSLMA
QGLISLTNPTTTQDSLGLEFDADLLKVRHESAISSLYADLPRQCTTCGLRFKFQEEHSTH
MDWHVTRNRMSKNLKHKPSRKWFVSGSIWLSGAEALGTNSVPGFFPTEDIVEKKDDEELA
VPADEDQSICALCGEPFDDFYSDETEEWMYRGAVYMNAPNGSVEGIDRSQLGP
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggccatgcccaatgaactagcgcaaaagcaactgccgtcgatatccgagcggttcaag
gctttattgaagcaacgggaagatgaactaagggtttccggatgtgtcgccgatgacgat
ttaggggcaacgctgaccacggaggagattttgcagctgtacgagattgtgttatcggaa
cttactttcaattcaaagccgataattactgatctcacgatcattgccggtgaacagcga
gagcacggcgaaggcattgccgatgctatttgctcccgaattattgaggttccagtagag
cagaaacttccttctttatatctattagatagcattgtgaaaaatattggccgagaatat
gttaggtatttctcttcccgtttgccagaggtattttgtgaggcatacaggcaagttaat
cctaacatgcatcctgcaatgcgtcatttatttggtacgtggtctactgtgttttcgcct
gatgtcctccgtgaaatcgagatgcagttacaatttgctcaacctgcaagccaaaaatcg
tctactgtaacttccctgcagacttccgaatcgcctcgtccagcacatggcatacatgtt
aatcctaagtacttgcggcagtttgaacaacagtcaggtgaagagagtaatactcagcat
gtaagaagcatgtcttccggtcaaaaattgtatggtcaaaaacataacattggatacgat
gaatttgattctgatcatactgtggttccatcctcacatattggtgtacaaagattgagc
tcaactggaaatgttgggcgtacttctgttgcaattggggctaagaagccacaactttct
tcagcttccagagtttcaagacccttctcatcatcaacgactggatctgatagactaata
tcatcagaagttgatgatctgccatcagatgattctcctagaaggtttgctgagatagcg
tctccatttcggcctggctttgattttggatgtagaagaggaaccatcagagatgatgaa
acaagagagtggaagaagaagcacttgtatggagattaccgtaattcttctgaaagctct
ttgaatgcatacaagcttagtaatggaaatgagcgccaaacactcagggctttaatagat
gcatatggtaatgatagaggacaaggaatgcctaacaggaagcctatacatgttgagcgg
ttggatgtaaatggattgggaaataaggtgactccaagatcatggcagaatactgaagag
gaagagtttgattgggaagatatgagcccaacattaacagctcgaaggagcaatgaattt
tcagtgtcatctgttcccgcttttggaagcatcggagcaagacctgccggaatagagtct
aatagtaggagcagtcgcacccttgttgatgattcttcagcaattcctgaagatgcagtt
tcttccctgagttctggtcgtggattaaatacgattcaacattcgcgttatcctcaggat
gcttggagttcctcatactctttttcccagtcatcgcatccccttcatgccaaaggaaga
ggaagggatttccaaatgcccttttcagctagtggatctgcttcttctagccttgatgtt
gttattgttggagcccagccgaccattttaccaatgacaagtggggtttggcccccagta
gatgttcataagtctcagcaaccgactgtgcactctaactattcattgcagcagcatggc
aggagtcattttgattcactgaatcctatcaatgctgccttgaatcagggtcaaaacgaa
catccatatatgcctgaacagtttgatggtcttgaaaggaaagatcaaagcttggtaatg
gcaacgcaagttcctggacaacgttctgcattgcaacaacggaactcattgcatggtcca
ctgcttcctaaccaacctcagggtggtgcgtttactggtttgattagttccctcatggct
caaggtttgatttcattgacgaatccaactaccacacaggattctttgggccttgagttt
gatgcagacctcctcaaggtgcgacatgagtctgctataagttctttatatgctgatctt
ccaaggcagtgcacaacatgtggccttcggttcaagttccaagaggagcatagtactcat
atggattggcatgtgacaagaaatcggatgtctaagaaccttaagcataagccttcccgg
aagtggtttgtgagtggtagtatttggcttagtggtgcggaagcattgggaactaattca
gttcctgggtttttccctactgaggacattgtagaaaagaaggatgatgaagaattggca
gttcccgctgatgaagatcagagcatatgtgcattatgtggtgagccttttgatgatttt
tatagtgatgaaacagaggagtggatgtatagaggggctgtctacatgaatgcacccaat
ggatcagtggaaggcattgatagatcacagttaggtccatag
DBGET
integrated database retrieval system
