Hibiscus syriacus (Rose-of-Sharon): 120152058
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Entry
120152058 CDS
T09559
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120152058
09123 Folding, sorting and degradation
03018 RNA degradation
120152058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120152058
03041 Spliceosome [BR:
hsyr03041
]
120152058
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120152058
mRNA degradation factors
5'-3' decay
Lsm complex
120152058
Spliceosome [BR:
hsyr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120152058
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
120152058
NCBI-ProteinID:
XP_039020286
LinkDB
All DBs
Position
Unknown
AA seq
169 aa
AA seq
DB search
LTLRFDSLEIAWREGGNRERKKKKVSASSFFTENVQGHPTLVELKNGETYNGHLVNCDTW
MNIHLREVICTSKDGDRFWRMPECNIRGNTIKYLRVPDEVIDKVQEEMKSRADRKPPVFG
RGRGRGREDGPGRQPKGARYGFEDGAKGQEDEPGVAQVERPAEAEIKLL
NT seq
510 nt
NT seq
+upstream
nt +downstream
nt
ttaactcttcgttttgattccttagaaatcgcctggagagagggggggaaccgggaaagg
aaaaagaaaaaagtttcagcttcctctttctttactgaaaatgtccagggtcatcctacg
ctggtggaactgaaaaatggggagacttataacggtcatttggtcaattgcgacacttgg
atgaacatacatcttcgtgaagtcatctgcacttcaaaggatggagacaggttttggcga
atgcctgaatgcaatatccgtggaaatacaatcaagtatcttcgagttcctgatgaggta
attgataaagttcaggaagaaatgaagagccgtgcagataggaagcctcctgtttttggc
cgtggtagaggtagaggtagagaagatggtcctggaaggcaaccaaaaggagctcggtat
ggttttgaagatggtgccaaggggcaggaggacgagccaggggtggctcaggtggaaaga
ccagcggaagcagagataaaattgctataa
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integrated database retrieval system
