Hibiscus syriacus (Rose-of-Sharon): 120152551
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Entry
120152551 CDS
T09559
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120152551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120152551
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120152551
mRNA degradation factors
5'-3' decay
Decapping complex
120152551
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_Vps41
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_EML_2
CheB_methylest
Motif
Other DBs
NCBI-GeneID:
120152551
NCBI-ProteinID:
XP_039020679
LinkDB
All DBs
Position
Unknown
AA seq
1394 aa
AA seq
DB search
MASSGNPNQQPQSGGGGFDLNKLFKPSSGPMLQHLQNTNVVATPPSPSPNTTNLPTSPSF
PAQSSTPPPPPFLTPSSSYPPPIGTYPFYHHPYLPYPPPPQQQLPLHPNPNPPPINPNRP
IHFQPQPSAPTTPTSGNDILMAFFGTQSQSQAPAPPPSAPPLSMNVKPSSPSSPSPVRLL
SSKLPKGRHLHGTNLLYDINARMPSEVQPQLEVTPITKYASDPGLVLGRQIAVNSNYICY
GLKLGNIRILNINTALRSLLRGHTQRVTDMAFLAEDVHLLASASLDGRLFIWKINEGPDV
EDKPQIFGKVVIAIQIVGQEESMHPRVCWHPHKQEILMVAIGNRILKIDTTKVGKLEGFS
AEEPLKCSLDKLIDGVQFVGKHDGEITELSMCQWLTTRLASASVDGTVKIWDDRKPLPLA
VLRPHDGHPVSSATFLTAPHRPDHIVLITGGPLNREVKMWASSSEEGWLLPSDSESWKCT
QTLELKCSAESEVDNAFFNQVVALPHAGLFLLANAKKNAIYAVHIDYGPHPAATCMDYIA
EFTVTMPILSLTVTSDNLPGRESVQVYCVQTQAIQQYALELSQCLPPLLEKTDLDKTDSN
VAHIFDAMNSDGSASLEFSQGYKPTDLTQNSSAPLSYINSSSHENAVMSCSPQKSASSEV
TSISESALIGMESKPNVFLSGSSAEYMHIASPPLPLTPRLSQKSSGFRSPSSADHVNHSA
LDHSVDHKVDTLKENKVEMPYIGHSMRKGEDTAQNDISNVHDPHTVFKHPTHLVTPSEIL
SNVSSSTENAQVCQVINEGEATVKDVVKNDAERIDADDEVLGETKFSETNETRCSQGSHT
SVADNKEKAFYSQASDLGIQMARDISAESYDAEGAQQANHMGASVQADRLMNSCDRGDHK
VNKDAPPKVGETDIAFTVSPSPVSAKGKKQKKKSSQVSILSSLSASPYNSTDSSNEPGCN
SMALSADAIFPQLLAMQDMLEQSLSVQKQMNAVVSALVNKEGKRLETSLGRSIEKVVKAN
TDSLWARFQNENARREKLERDHMQQITNLVTNSINKDLPAMFVKSLQKEIAAVGPVVARA
IIPTLEKSISSAITESFQKGVGEKAVNHLEKSVSSKLEATLARQIQVQFQTSGKQALQDA
LRSSLETYVIPAFEMSCKSMFEQIDATFQKGIREHTTTAQQQVEKSHSSVVAALQEAINS
AASITRTLSGELADGQRKLLAMAAAGGNSNAGNPLVTQSSNGPLAHLHEMQPEAHMDPME
ELGRKIAEKKYDEAFTAALYRSDVSIVSWLCSQVDLQGILSMKPCPLSQGVLLALFQQLA
CDINNETSRKLAWMTDVAVAIDPSDPTIAMHVVPIFRQVSQIVDHLQTMLSTSAPESTSI
RLLKFVINSVLSGR
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctccgggaatcccaatcagcaaccacaaagcggcggcggcgggttcgatttg
aacaaactgttcaaacccagttccggccctatgctgcagcatcttcaaaacacgaacgta
gtagcaactcctccaagtcctagtcctaacactaccaaccttcctacatccccttctttc
ccggcccaatcctccacgccgcctccaccgcctttcttgacgccgtcctcctcttaccct
ccgcctattgggacctaccctttctaccaccacccctatcttccctaccctcctcctcct
cagcagcaactccccttgcatcctaatccgaatccaccaccgattaatcccaatagaccc
attcattttcaaccccaaccctcagcacccaccactcctacttcaggaaacgacatttta
atggcctttttcggcactcaatctcagtcacaagctcctgcgcctcccccatctgctccg
cctcttagtatgaatgtcaaaccatcttccccttcgtctccttcacctgtccgactgttg
agtagcaagctccccaagggcaggcatctacatggaaccaatctcctttatgatattaat
gccaggatgcccagtgaagtacagccccaacttgaggtcactcccattaccaagtatgct
tctgatcctggccttgttcttggtcgtcagattgctgttaatagtaattacatttgttat
ggtctcaagcttgggaatatccgtatcctcaacatcaacactgccctccgatccttgctt
cgtggccacactcagagagtaactgacatggcttttcttgccgaggatgtccaccttttg
gccagtgcaagtcttgatggccggctttttatatggaagatcaatgaaggccctgatgtt
gaagataagccgcagatttttggcaaagttgttattgccattcagattgtggggcaagaa
gaatcaatgcatcctcgagtctgttggcatccccacaaacaagagatcttgatggttgct
attggaaatcgtatcctgaaaattgatacaacgaaagttggaaaacttgaagggttttca
gcagaggaacctcttaagtgctctcttgataagcttattgatggagttcagtttgttggt
aaacatgatggtgagattacagagttgtcaatgtgccaatggttgaccacccgtttagct
tcggcctctgtagatggaacggtgaaaatttgggacgatcgtaagcccttaccacttgcg
gtgttgagaccacatgatggacatcctgttagctcagcaacattcttgactgctccacat
cgccctgatcatattgttcttatcacaggaggcccactaaatcgtgaagtgaagatgtgg
gcctcttcaagtgaagaaggctggttgttgccgagtgatagtgaatcatggaagtgtact
caaacacttgaattgaagtgttctgctgagtctgaggttgacaatgcattctttaatcaa
gttgtggcactgccccatgcaggcctgtttctgcttgcaaatgcgaaaaagaatgctata
tatgctgtacacatagactacggacctcatcccgcagctacttgcatggattacatagct
gaattcactgtcacaatgcctatattgagtctcactgttacaagtgataatttgccgggt
agagaatctgtccaagtttactgcgttcaaacacaggctattcagcaatatgctttggaa
ttgtctcagtgcttgccaccacttctggaaaagacagacttggataaaacagattccaat
gttgctcatatttttgatgccatgaactctgatggttctgcttctctagaattctctcag
ggatataaaccaaccgacttgactcaaaattcctcagctcctttgtcatatataaactca
agtagccatgaaaatgccgtcatgtcctgcagtccacaaaagtcagcttcttcagaggtg
acttccatatctgagagtgctttgattggtatggaaagtaagccaaatgtttttctgtct
ggtagtagtgctgaatatatgcacattgcatcacctccacttccgttaactccaaggtta
tcacaaaagtcttctggttttagaagtccatcaagtgctgaccatgttaaccactcagca
cttgatcattctgttgaccataaagtggacacactcaaagagaataaggttgaaatgccc
tacataggtcatagcatgcgaaaaggtgaagatactgcccaaaatgacatttcaaatgtt
catgatcctcatacagtgttcaaacatccaacccatctagtaacaccatctgagatattg
tctaatgtatcttcatccacagagaatgctcaggtttgtcaggttattaatgagggggag
gcaacagtcaaagatgtggtcaagaatgatgctgaaagaatagacgcagatgatgaagtt
cttggcgaaacaaaattttctgaaaccaatgaaaccagatgttcacaaggctctcatact
tctgttgcagataacaaagaaaaggccttctactctcaggcatcggatcttggcattcag
atggccagagatatttctgcagaaagttatgatgctgagggagctcaacaagctaatcac
atgggtgcttcagttcaagctgatagacttatgaattcttgtgataggggtgaccataaa
gtaaataaagatgcccctccaaaggttggtgaaacagacattgctttcactgtttcccca
tctcctgtttctgctaaagggaaaaagcagaagaagaaaagttctcaagtatctattctc
tcctccctttcagcgagcccatataattctacagattcatctaatgaaccagggtgcaat
tcgatggctctgtcagctgatgctattttccctcaattgttggccatgcaagatatgctt
gagcagtcccttagcgtgcagaagcagatgaatgcggttgtctctgctctggttaacaaa
gaagggaaaagactggaaacatccttgggcaggagcattgagaaagttgtaaaggcaaat
acagattctttgtgggctcgtttccaaaatgaaaatgcaaggcgagagaagttagaaaga
gaccacatgcagcagataacaaatttggtcaccaactctattaataaggacttgccagcc
atgtttgtgaaatccttacagaaggagatagctgcagttggccctgttgtggctcgggct
attattcccactctggagaaaagtatctcttctgccattactgagtcattccagaaagga
gttggagagaaggcagtgaatcatttggaaaagtcagttagttccaaacttgaagcgaca
ttggccaggcaaatccaagtacagtttcaaacttctggaaagcaagcacttcaggatgca
ctgaggtctagcttggaaacttatgttattccagcattcgaaatgtcgtgcaaatccatg
tttgagcaaattgatgccacatttcagaaagggataagagaacacacaactactgctcaa
cagcaagttgaaaaatcacattcttctgttgttgctgctctacaggaagctattaactct
gcagcttcaatcacacgaactttaagtggagaattggcagatgggcaaagaaaacttcta
gctatggcagctgcaggtggcaactctaatgcaggaaatcccttggtgacacaatcgagt
aatggaccattggctcatctgcacgagatgcagccggaggcacatatggatccaatggag
gagttgggaagaaagatagctgagaagaaatatgatgaagcattcaccgcagccctgtac
agaagtgatgtctccatagtttcctggttgtgttctcaggtcgatctgcaagggatattg
tcgatgaagccatgcccgcttagccaaggagtattgctagctcttttccagcaactggct
tgtgatatcaataatgaaacaagtagaaagctggcatggatgactgatgtagctgtggcc
atagacccctcggatccaacaattgccatgcatgtcgtaccgatcttcaggcaggtctct
cagattgtggatcatctacaaaccatgttgtctacatctgcacccgaatccactagcatt
cgccttcttaagtttgtcataaacagtgtgttgagcggtagatga
DBGET
integrated database retrieval system
